#include <rb_evaluation.h>
Public Member Functions | |
RBEvaluation (const Parallel::Communicator &comm) | |
virtual | ~RBEvaluation () |
virtual void | clear () override |
void | set_rb_theta_expansion (RBThetaExpansion &rb_theta_expansion_in) |
RBThetaExpansion & | get_rb_theta_expansion () |
bool | is_rb_theta_expansion_initialized () const |
virtual void | resize_data_structures (const unsigned int Nmax, bool resize_error_bound_data=true) |
NumericVector< Number > & | get_basis_function (unsigned int i) |
virtual Real | rb_solve (unsigned int N) |
virtual Real | get_error_bound_normalization () |
virtual Real | compute_residual_dual_norm (const unsigned int N) |
virtual Real | residual_scaling_denom (Real alpha_LB) |
Real | eval_output_dual_norm (unsigned int n, const RBParameters &mu) |
virtual Real | get_stability_lower_bound () |
virtual unsigned int | get_n_basis_functions () const |
virtual void | set_n_basis_functions (unsigned int n_bfs) |
virtual void | clear_riesz_representors () |
virtual void | legacy_write_offline_data_to_files (const std::string &directory_name="offline_data", const bool write_binary_data=true) |
virtual void | legacy_read_offline_data_from_files (const std::string &directory_name="offline_data", bool read_error_bound_data=true, const bool read_binary_data=true) |
virtual void | write_out_basis_functions (System &sys, const std::string &directory_name="offline_data", const bool write_binary_basis_functions=true) |
virtual void | write_out_vectors (System &sys, std::vector< NumericVector< Number > *> &vectors, const std::string &directory_name="offline_data", const std::string &data_name="bf", const bool write_binary_basis_functions=true) |
virtual void | read_in_basis_functions (System &sys, const std::string &directory_name="offline_data", const bool read_binary_basis_functions=true) |
void | read_in_vectors (System &sys, std::vector< std::unique_ptr< NumericVector< Number >>> &vectors, const std::string &directory_name, const std::string &data_name, const bool read_binary_vectors) |
void | read_in_vectors_from_multiple_files (System &sys, std::vector< std::vector< std::unique_ptr< NumericVector< Number >>> *> multiple_vectors, const std::vector< std::string > &multiple_directory_names, const std::vector< std::string > &multiple_data_names, const bool read_binary_vectors) |
void | initialize_parameters (const RBParameters &mu_min_in, const RBParameters &mu_max_in, const std::map< std::string, std::vector< Real >> &discrete_parameter_values) |
void | initialize_parameters (const RBParametrized &rb_parametrized) |
unsigned int | get_n_params () const |
unsigned int | get_n_continuous_params () const |
unsigned int | get_n_discrete_params () const |
std::set< std::string > | get_parameter_names () const |
const RBParameters & | get_parameters () const |
void | set_parameters (const RBParameters ¶ms) |
const RBParameters & | get_parameters_min () const |
const RBParameters & | get_parameters_max () const |
Real | get_parameter_min (const std::string ¶m_name) const |
Real | get_parameter_max (const std::string ¶m_name) const |
void | print_parameters () const |
void | write_parameter_data_to_files (const std::string &continuous_param_file_name, const std::string &discrete_param_file_name, const bool write_binary_data) |
void | read_parameter_data_from_files (const std::string &continuous_param_file_name, const std::string &discrete_param_file_name, const bool read_binary_data) |
bool | is_discrete_parameter (const std::string &mu_name) const |
const std::map< std::string, std::vector< Real > > & | get_discrete_parameter_values () const |
void | print_discrete_parameter_values () const |
const Parallel::Communicator & | comm () const |
processor_id_type | n_processors () const |
processor_id_type | processor_id () const |
Static Public Member Functions | |
static Real | get_closest_value (Real value, const std::vector< Real > &list_of_values) |
static std::string | get_info () |
static void | print_info (std::ostream &out=libMesh::out) |
static unsigned int | n_objects () |
static void | enable_print_counter_info () |
static void | disable_print_counter_info () |
Public Attributes | |
std::vector< std::unique_ptr< NumericVector< Number > > > | basis_functions |
std::vector< RBParameters > | greedy_param_list |
DenseMatrix< Number > | RB_inner_product_matrix |
std::vector< DenseMatrix< Number > > | RB_Aq_vector |
std::vector< DenseVector< Number > > | RB_Fq_vector |
DenseVector< Number > | RB_solution |
std::vector< std::vector< DenseVector< Number > > > | RB_output_vectors |
std::vector< Number > | RB_outputs |
std::vector< Real > | RB_output_error_bounds |
std::vector< Number > | Fq_representor_innerprods |
std::vector< std::vector< std::vector< Number > > > | Fq_Aq_representor_innerprods |
std::vector< std::vector< std::vector< Number > > > | Aq_Aq_representor_innerprods |
std::vector< std::vector< Number > > | output_dual_innerprods |
std::vector< std::vector< std::unique_ptr< NumericVector< Number > > > > | Aq_representor |
bool | evaluate_RB_error_bound |
bool | compute_RB_inner_product |
bool | verbose_mode |
Protected Types | |
typedef std::map< std::string, std::pair< unsigned int, unsigned int > > | Counts |
Protected Member Functions | |
void | assert_file_exists (const std::string &file_name) |
void | increment_constructor_count (const std::string &name) |
void | increment_destructor_count (const std::string &name) |
Protected Attributes | |
const Parallel::Communicator & | _communicator |
Static Protected Attributes | |
static Counts | _counts |
static Threads::atomic< unsigned int > | _n_objects |
static Threads::spin_mutex | _mutex |
static bool | _enable_print_counter = true |
Private Attributes | |
RBThetaExpansion * | rb_theta_expansion |
This class is part of the rbOOmit framework.
RBEvaluation encapsulates the functionality required to evaluate a given reduced basis model.
Definition at line 51 of file rb_evaluation.h.
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protectedinherited |
Data structure to log the information. The log is identified by the class name.
Definition at line 117 of file reference_counter.h.
libMesh::RBEvaluation::RBEvaluation | ( | const Parallel::Communicator & | comm | ) |
Constructor.
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virtual |
Destructor.
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protected |
Helper function that checks if file_name
exists.
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overridevirtual |
Clear this RBEvaluation object. Delete the basis functions and clear and extra data in subclasses.
Reimplemented from libMesh::RBParametrized.
Reimplemented in libMesh::RBEIMEvaluation, and libMesh::TransientRBEvaluation.
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virtual |
Clear all the Riesz representors that are used to compute the RB residual (and hence error bound). This is useful since once we complete the Greedy we may not need the representors any more.
Reimplemented in libMesh::TransientRBEvaluation.
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inlineinherited |
Parallel::Communicator
object used by this mesh. Definition at line 89 of file parallel_object.h.
References libMesh::ParallelObject::_communicator.
Referenced by libMesh::__libmesh_petsc_diff_solver_jacobian(), libMesh::__libmesh_petsc_diff_solver_monitor(), libMesh::__libmesh_petsc_diff_solver_residual(), libMesh::__libmesh_tao_equality_constraints(), libMesh::__libmesh_tao_equality_constraints_jacobian(), libMesh::__libmesh_tao_gradient(), libMesh::__libmesh_tao_hessian(), libMesh::__libmesh_tao_inequality_constraints(), libMesh::__libmesh_tao_inequality_constraints_jacobian(), libMesh::__libmesh_tao_objective(), libMesh::MeshRefinement::_coarsen_elements(), libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::SlepcEigenSolver< T >::_petsc_shell_matrix_get_diagonal(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_get_diagonal(), libMesh::SlepcEigenSolver< T >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_mult_add(), libMesh::EquationSystems::_read_impl(), libMesh::MeshRefinement::_refine_elements(), libMesh::MeshRefinement::_smooth_flags(), libMesh::PetscDMWrapper::add_dofs_helper(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::ImplicitSystem::add_matrix(), libMesh::System::add_vector(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::FEMSystem::assemble_qoi(), libMesh::MeshCommunication::assign_global_indices(), libMesh::DofMap::attach_matrix(), libMesh::MeshTools::Generation::build_extrusion(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::PetscDMWrapper::build_section(), libMesh::PetscDMWrapper::build_sf(), libMesh::MeshBase::cache_elem_dims(), libMesh::System::calculate_norm(), libMesh::DofMap::check_dirichlet_bcid_consistency(), libMesh::PetscDMWrapper::check_section_n_dofs(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Problem_Interface::computeF(), libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::MeshTools::create_bounding_box(), libMesh::MeshTools::create_nodal_bounding_box(), libMesh::MeshRefinement::create_parent_error_vector(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::MeshTools::create_subdomain_bounding_box(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), DMlibMeshFunction(), DMlibMeshJacobian(), DMlibMeshSetSystem_libMesh(), DMVariableBounds_libMesh(), libMesh::MeshRefinement::eliminate_unrefined_patches(), libMesh::EpetraVector< T >::EpetraVector(), libMesh::WeightedPatchRecoveryErrorEstimator::estimate_error(), libMesh::PatchRecoveryErrorEstimator::estimate_error(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::MeshRefinement::flag_elements_by_elem_fraction(), libMesh::MeshRefinement::flag_elements_by_error_fraction(), libMesh::MeshRefinement::flag_elements_by_nelem_target(), libMesh::CondensedEigenSystem::get_eigenpair(), libMesh::DofMap::get_info(), libMesh::ImplicitSystem::get_linear_solver(), libMesh::LocationMap< T >::init(), libMesh::TimeSolver::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::EigenSystem::init_data(), libMesh::EigenSystem::init_matrices(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_flags(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_p_levels(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::MeshTools::libmesh_assert_valid_unique_ids(), libMesh::libmesh_petsc_snes_fd_residual(), libMesh::libmesh_petsc_snes_jacobian(), libMesh::libmesh_petsc_snes_mffd_residual(), libMesh::libmesh_petsc_snes_postcheck(), libMesh::libmesh_petsc_snes_residual(), libMesh::libmesh_petsc_snes_residual_helper(), libMesh::MeshRefinement::limit_level_mismatch_at_edge(), libMesh::MeshRefinement::limit_level_mismatch_at_node(), libMesh::MeshRefinement::limit_overrefined_boundary(), libMesh::MeshRefinement::limit_underrefined_boundary(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshCommunication::make_elems_parallel_consistent(), libMesh::MeshRefinement::make_flags_parallel_consistent(), libMesh::MeshCommunication::make_new_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_new_nodes_parallel_consistent(), libMesh::MeshCommunication::make_node_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_unique_ids_parallel_consistent(), libMesh::MeshCommunication::make_nodes_parallel_consistent(), libMesh::MeshCommunication::make_p_levels_parallel_consistent(), libMesh::MeshRefinement::make_refinement_compatible(), libMesh::FEMSystem::mesh_position_set(), libMesh::DistributedMesh::n_active_elem(), libMesh::MeshTools::n_active_levels(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::CondensedEigenSystem::n_global_non_condensed_dofs(), libMesh::MeshTools::n_levels(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::MeshTools::n_p_levels(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::DistributedMesh::parallel_max_elem_id(), libMesh::DistributedMesh::parallel_max_node_id(), libMesh::ReplicatedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_n_elem(), libMesh::DistributedMesh::parallel_n_nodes(), libMesh::SparsityPattern::Build::parallel_sync(), libMesh::MeshTools::paranoid_n_levels(), libMesh::petsc_auto_fieldsplit(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::MeshBase::prepare_for_use(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::System::read_legacy_data(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::MeshBase::recalculate_n_partitions(), libMesh::MeshRefinement::refine_and_coarsen_elements(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::CheckpointIO::select_split_config(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::PetscDiffSolver::setup_petsc_data(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::split_mesh(), libMesh::MeshBase::subdomain_ids(), libMesh::BoundaryInfo::sync(), libMesh::MeshRefinement::test_level_one(), libMesh::MeshRefinement::test_unflagged(), libMesh::MeshTools::total_weight(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().
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virtual |
Compute the dual norm of the residual for the solution saved in RB_solution_vector.
Reimplemented in libMesh::TransientRBEvaluation.
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staticinherited |
Definition at line 106 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter.
Referenced by libMesh::LibMeshInit::LibMeshInit().
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staticinherited |
Methods to enable/disable the reference counter output from print_info()
Definition at line 100 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter.
Real libMesh::RBEvaluation::eval_output_dual_norm | ( | unsigned int | n, |
const RBParameters & | mu | ||
) |
Evaluate the dual norm of output n
for the current parameters.
NumericVector<Number>& libMesh::RBEvaluation::get_basis_function | ( | unsigned int | i | ) |
Get a reference to the i^th basis function.
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staticinherited |
value
from list_of_values
.
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inherited |
Get a const reference to the discrete parameter values.
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virtual |
Reimplemented in libMesh::RBEIMEvaluation, and libMesh::TransientRBEvaluation.
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staticinherited |
Gets a string containing the reference information.
Definition at line 47 of file reference_counter.C.
References libMesh::ReferenceCounter::_counts, and libMesh::Quality::name().
Referenced by libMesh::ReferenceCounter::print_info().
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inlinevirtual |
Get the current number of basis functions.
Definition at line 146 of file rb_evaluation.h.
References basis_functions.
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inherited |
Get the number of continuous parameters.
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inherited |
Get the number of discrete parameters.
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inherited |
Get the number of parameters.
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inherited |
Get maximum allowable value of parameter param_name
.
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inherited |
Get minimum allowable value of parameter param_name
.
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inherited |
Get a set that stores the parameter names.
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inherited |
Get the current parameters.
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inherited |
Get an RBParameters object that specifies the maximum allowable value for each parameter.
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inherited |
Get an RBParameters object that specifies the minimum allowable value for each parameter.
RBThetaExpansion& libMesh::RBEvaluation::get_rb_theta_expansion | ( | ) |
Get a reference to the rb_theta_expansion.
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virtual |
Get a lower bound for the stability constant (e.g. coercivity constant or inf-sup constant) at the current parameter value.
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inlineprotectedinherited |
Increments the construction counter. Should be called in the constructor of any derived class that will be reference counted.
Definition at line 181 of file reference_counter.h.
References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.
Referenced by libMesh::ReferenceCountedObject< RBParametrized >::ReferenceCountedObject().
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inlineprotectedinherited |
Increments the destruction counter. Should be called in the destructor of any derived class that will be reference counted.
Definition at line 194 of file reference_counter.h.
References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.
Referenced by libMesh::ReferenceCountedObject< RBParametrized >::~ReferenceCountedObject().
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inherited |
Initialize the parameter ranges and set current_parameters.
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inherited |
Initialize the parameter ranges and set current_parameters.
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inherited |
Is parameter mu_name
discrete?
bool libMesh::RBEvaluation::is_rb_theta_expansion_initialized | ( | ) | const |
true
if the theta expansion has been initialized.
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virtual |
Read in the saved Offline reduced basis data to initialize the system for Online solves.
Reimplemented in libMesh::RBEIMEvaluation, and libMesh::TransientRBEvaluation.
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virtual |
Write out all the data to text files in order to segregate the Offline stage from the Online stage.
Reimplemented in libMesh::RBEIMEvaluation, and libMesh::TransientRBEvaluation.
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inlinestaticinherited |
Prints the number of outstanding (created, but not yet destroyed) objects.
Definition at line 83 of file reference_counter.h.
References libMesh::ReferenceCounter::_n_objects.
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inlineinherited |
Definition at line 95 of file parallel_object.h.
References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::size().
Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::DistributedMesh::add_node(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::FEMSystem::assembly(), libMesh::AztecLinearSolver< T >::AztecLinearSolver(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::UnstructuredMesh::create_pid_mesh(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::EnsightIO::EnsightIO(), libMesh::MeshBase::get_info(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::Nemesis_IO_Helper::initialize(), libMesh::DistributedMesh::insert_elem(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::DofMap::local_variable_indices(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshBase::n_active_elem_on_proc(), libMesh::MeshBase::n_elem_on_proc(), libMesh::MeshBase::n_nodes_on_proc(), libMesh::MeshBase::partition(), libMesh::PetscLinearSolver< T >::PetscLinearSolver(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::CheckpointIO::read_connectivity(), libMesh::XdrIO::read_header(), libMesh::CheckpointIO::read_nodes(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::System::read_serialized_vector(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::GMVIO::write_binary(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::System::write_parallel_data(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().
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inherited |
Print out all the discrete parameter values.
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staticinherited |
Prints the reference information, by default to libMesh::out
.
Definition at line 87 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter, and libMesh::ReferenceCounter::get_info().
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inherited |
Print the current parameters.
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inlineinherited |
Definition at line 101 of file parallel_object.h.
References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::rank().
Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::EquationSystems::_read_impl(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::BoundaryInfo::add_elements(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::FEMSystem::assembly(), libMesh::EquationSystems::build_discontinuous_solution_vector(), libMesh::Nemesis_IO_Helper::build_element_and_node_maps(), libMesh::InfElemBuilder::build_inf_elem(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::ExodusII_IO_Helper::close(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::compute_communication_map_parameters(), libMesh::Nemesis_IO_Helper::compute_internal_and_border_elems_and_internal_nodes(), libMesh::Nemesis_IO_Helper::compute_node_communication_maps(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::ExodusII_IO_Helper::create(), libMesh::DistributedMesh::delete_elem(), libMesh::DistributedMesh::delete_node(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::DistributedMesh::DistributedMesh(), libMesh::DofMap::end_dof(), libMesh::DofMap::end_old_dof(), libMesh::EnsightIO::EnsightIO(), libMesh::MeshFunction::find_element(), libMesh::MeshFunction::find_elements(), libMesh::UnstructuredMesh::find_neighbors(), libMesh::DofMap::first_dof(), libMesh::DofMap::first_old_dof(), libMesh::Nemesis_IO_Helper::get_cmap_params(), libMesh::Nemesis_IO_Helper::get_eb_info_global(), libMesh::Nemesis_IO_Helper::get_elem_cmap(), libMesh::Nemesis_IO_Helper::get_elem_map(), libMesh::MeshBase::get_info(), libMesh::DofMap::get_info(), libMesh::Nemesis_IO_Helper::get_init_global(), libMesh::Nemesis_IO_Helper::get_init_info(), libMesh::Nemesis_IO_Helper::get_loadbal_param(), libMesh::Nemesis_IO_Helper::get_node_cmap(), libMesh::Nemesis_IO_Helper::get_node_map(), libMesh::Nemesis_IO_Helper::get_ns_param_global(), libMesh::Nemesis_IO_Helper::get_ss_param_global(), libMesh::SparsityPattern::Build::handle_vi_vj(), libMesh::SystemSubsetBySubdomain::init(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::ExodusII_IO_Helper::initialize_element_variables(), libMesh::ExodusII_IO_Helper::initialize_global_variables(), libMesh::ExodusII_IO_Helper::initialize_nodal_variables(), libMesh::DistributedMesh::insert_elem(), libMesh::DofMap::is_evaluable(), libMesh::SparsityPattern::Build::join(), libMesh::DofMap::last_dof(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DofMap::local_variable_indices(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshBase::n_active_local_elem(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::DofMap::n_local_dofs(), libMesh::System::n_local_dofs(), libMesh::MeshBase::n_local_elem(), libMesh::MeshBase::n_local_nodes(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::SparsityPattern::Build::operator()(), libMesh::DistributedMesh::own_node(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::Nemesis_IO_Helper::put_cmap_params(), libMesh::Nemesis_IO_Helper::put_elem_cmap(), libMesh::Nemesis_IO_Helper::put_elem_map(), libMesh::Nemesis_IO_Helper::put_loadbal_param(), libMesh::Nemesis_IO_Helper::put_node_cmap(), libMesh::Nemesis_IO_Helper::put_node_map(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read(), libMesh::ExodusII_IO_Helper::read_elem_num_map(), libMesh::ExodusII_IO_Helper::read_global_values(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::System::read_legacy_data(), libMesh::ExodusII_IO_Helper::read_node_num_map(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::System::read_serialized_data(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::System::read_serialized_vectors(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::CheckpointIO::select_split_config(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::MeshTools::total_weight(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::Parallel::Packing< T >::unpack(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::CheckpointIO::write(), libMesh::EquationSystems::write(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO::write_element_data(), libMesh::ExodusII_IO_Helper::write_element_values(), libMesh::ExodusII_IO_Helper::write_elements(), libMesh::ExodusII_IO::write_global_data(), libMesh::ExodusII_IO_Helper::write_global_values(), libMesh::System::write_header(), libMesh::ExodusII_IO::write_information_records(), libMesh::ExodusII_IO_Helper::write_information_records(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::UCDIO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data_discontinuous(), libMesh::ExodusII_IO_Helper::write_nodal_values(), libMesh::Nemesis_IO_Helper::write_nodesets(), libMesh::ExodusII_IO_Helper::write_nodesets(), libMesh::System::write_parallel_data(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bc_names(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::System::write_serialized_data(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::XdrIO::write_serialized_subdomain_names(), libMesh::System::write_serialized_vector(), libMesh::System::write_serialized_vectors(), libMesh::Nemesis_IO_Helper::write_sidesets(), libMesh::ExodusII_IO_Helper::write_sidesets(), libMesh::ExodusII_IO::write_timestep(), libMesh::ExodusII_IO_Helper::write_timestep(), and libMesh::ExodusII_IO::write_timestep_discontinuous().
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virtual |
Perform online solve with the N RB basis functions, for the set of parameters in current_params, where 0 <= N <= RB_size.
Reimplemented in libMesh::RBEIMEvaluation, and libMesh::TransientRBEvaluation.
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virtual |
Read in all the basis functions from file.
sys | Used for file IO. |
directory_name | Specifies which directory to write files to. |
read_binary_basis_functions | Indicates whether to expect binary or ASCII data. |
void libMesh::RBEvaluation::read_in_vectors | ( | System & | sys, |
std::vector< std::unique_ptr< NumericVector< Number >>> & | vectors, | ||
const std::string & | directory_name, | ||
const std::string & | data_name, | ||
const bool | read_binary_vectors | ||
) |
Same as read_in_basis_functions, except in this case we pass in the vectors to be written. We assume that the size of vectors indicates the number of vectors that need to be read in.
void libMesh::RBEvaluation::read_in_vectors_from_multiple_files | ( | System & | sys, |
std::vector< std::vector< std::unique_ptr< NumericVector< Number >>> *> | multiple_vectors, | ||
const std::vector< std::string > & | multiple_directory_names, | ||
const std::vector< std::string > & | multiple_data_names, | ||
const bool | read_binary_vectors | ||
) |
Performs read_in_vectors for a list of directory names and data names. Reading in vectors requires us to renumber the dofs in a partition-independent way. This function only renumbers the dofs once at the start (and reverts it at the end), which can save a lot of work compared to renumbering on every read.
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inherited |
Read in the parameter ranges from files.
Specifies the residual scaling on the denominator to be used in the a posteriori error bound. Override in subclass in order to obtain the desired error bound.
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virtual |
Resize and clear the data vectors corresponding to the value of Nmax
. Optionally resize the data structures required for the error bound. Override to also clear and resize any extra data in subclasses.
Reimplemented in libMesh::TransientRBEvaluation, and libMesh::RBEIMEvaluation.
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virtual |
Set the number of basis functions. Useful when reading in stored data.
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inherited |
Set the current parameters to params
void libMesh::RBEvaluation::set_rb_theta_expansion | ( | RBThetaExpansion & | rb_theta_expansion_in | ) |
Set the RBThetaExpansion object.
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virtual |
Write out all the basis functions to file. sys
is used for file IO directory_name
specifies which directory to write files to read_binary_basis_functions
indicates whether to expect binary or ASCII data
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virtual |
Same as write_out_basis_functions, except in this case we pass in the vectors to be written.
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inherited |
Write out the parameter ranges to files.
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protectedinherited |
Definition at line 107 of file parallel_object.h.
Referenced by libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::ParallelObject::comm(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::operator=(), and libMesh::ParallelObject::processor_id().
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staticprotectedinherited |
Actually holds the data.
Definition at line 122 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::get_info(), libMesh::ReferenceCounter::increment_constructor_count(), and libMesh::ReferenceCounter::increment_destructor_count().
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staticprotectedinherited |
Flag to control whether reference count information is printed when print_info is called.
Definition at line 141 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::disable_print_counter_info(), libMesh::ReferenceCounter::enable_print_counter_info(), and libMesh::ReferenceCounter::print_info().
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staticprotectedinherited |
Mutual exclusion object to enable thread-safe reference counting.
Definition at line 135 of file reference_counter.h.
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staticprotectedinherited |
The number of objects. Print the reference count information when the number returns to 0.
Definition at line 130 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::n_objects(), libMesh::ReferenceCounter::ReferenceCounter(), and libMesh::ReferenceCounter::~ReferenceCounter().
std::vector<std::vector<std::vector<Number> > > libMesh::RBEvaluation::Aq_Aq_representor_innerprods |
Definition at line 301 of file rb_evaluation.h.
std::vector<std::vector<std::unique_ptr<NumericVector<Number> > > > libMesh::RBEvaluation::Aq_representor |
Vector storing the residual representors associated with the left-hand side. These are basis dependent and hence stored here, whereas the Fq_representors are stored in RBSystem.
Definition at line 317 of file rb_evaluation.h.
std::vector<std::unique_ptr<NumericVector<Number> > > libMesh::RBEvaluation::basis_functions |
The libMesh vectors storing the finite element coefficients of the RB basis functions.
Definition at line 242 of file rb_evaluation.h.
Referenced by get_n_basis_functions().
bool libMesh::RBEvaluation::compute_RB_inner_product |
Boolean flag to indicate whether we compute the RB_inner_product_matrix.
Definition at line 328 of file rb_evaluation.h.
bool libMesh::RBEvaluation::evaluate_RB_error_bound |
Boolean to indicate whether we evaluate a posteriori error bounds when rb_solve is called.
Definition at line 323 of file rb_evaluation.h.
std::vector<std::vector<std::vector<Number> > > libMesh::RBEvaluation::Fq_Aq_representor_innerprods |
Vectors storing the residual representor inner products to be used in computing the residuals online. We store the Aq-dependent representor inner products because they depend on a reduced basis space. The basis independent representors are stored in RBSystem.
Definition at line 300 of file rb_evaluation.h.
std::vector<Number> libMesh::RBEvaluation::Fq_representor_innerprods |
Vectors storing the residual representor inner products to be used in computing the residuals online. These values are independent of a basis, hence they can be copied over directly from an RBSystem.
Definition at line 291 of file rb_evaluation.h.
std::vector<RBParameters> libMesh::RBEvaluation::greedy_param_list |
The list of parameters selected by the Greedy algorithm in generating the Reduced Basis associated with this RBEvaluation object.
Definition at line 248 of file rb_evaluation.h.
std::vector<std::vector<Number > > libMesh::RBEvaluation::output_dual_innerprods |
The vector storing the dual norm inner product terms for each output. These values are independent of a basis, hence they can be copied over directly from an RBSystem.
Definition at line 309 of file rb_evaluation.h.
std::vector<DenseMatrix<Number> > libMesh::RBEvaluation::RB_Aq_vector |
Dense matrices for the RB computations.
Definition at line 261 of file rb_evaluation.h.
std::vector<DenseVector<Number> > libMesh::RBEvaluation::RB_Fq_vector |
Dense vector for the RHS.
Definition at line 266 of file rb_evaluation.h.
DenseMatrix<Number> libMesh::RBEvaluation::RB_inner_product_matrix |
The inner product matrix. This should be close to the identity, we need to calculate this rather than assume diagonality in order to accurately perform projections since orthogonality degrades with increasing N.
Definition at line 256 of file rb_evaluation.h.
std::vector<Real > libMesh::RBEvaluation::RB_output_error_bounds |
Definition at line 283 of file rb_evaluation.h.
std::vector<std::vector<DenseVector<Number> > > libMesh::RBEvaluation::RB_output_vectors |
The vectors storing the RB output vectors.
Definition at line 276 of file rb_evaluation.h.
std::vector<Number > libMesh::RBEvaluation::RB_outputs |
The vectors storing the RB output values and corresponding error bounds.
Definition at line 282 of file rb_evaluation.h.
DenseVector<Number> libMesh::RBEvaluation::RB_solution |
The RB solution vector.
Definition at line 271 of file rb_evaluation.h.
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private |
A pointer to to the object that stores the theta expansion. This is not a std::unique_ptr since we may want to share it.
shared_ptr
would be a good option here. Definition at line 345 of file rb_evaluation.h.
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inherited |
Public boolean to toggle verbose mode.
Definition at line 170 of file rb_parametrized.h.