Please use the following citation to reference libMesh

[1] B. S. Kirk, J. W. Peterson, R. H. Stogner, and G. F. Carey. libMesh: A C++ Library for Parallel Adaptive Mesh Refinement/Coarsening Simulations. Engineering with Computers, 22(3--4):237--254, 2006. http://dx.doi.org/10.1007/s00366-006-0049-3.
@article{libMeshPaper,
  author = {B.~S.~Kirk and J.~W.~Peterson and R.~H.~Stogner and G.~F.~Carey},
  title = {{\texttt{libMesh}: A C++ Library for Parallel Adaptive Mesh Refinement/Coarsening Simulations}},
  journal = {Engineering with Computers},
  volume = 22,
  number = {3--4},
  pages = {237--254},
  year = 2006,
  note = {\url{http://dx.doi.org/10.1007/s00366-006-0049-3}}
}

Dissertations & Theses

[1] B. Berry. Numerical simulation of metallic uranium sintering. Master's thesis, University of Arkansas, May 2017. http://tinyurl.com/m8eofby.
@mastersthesis{Berry_thesis,
  author = {B.~Berry},
  school = {University of Arkansas},
  title = {{Numerical simulation of metallic uranium sintering}},
  note = {\url{http://tinyurl.com/m8eofby}},
  month = may,
  year = 2017
}
[2] A. Seoane. Implementation of orthotropic elasto-plastic model in MOOSE and pellet-cladding interaction simulations. Senior thesis (Bachelor of Science), Brigham Young University-Idaho, April 2017. http://tinyurl.com/kj2yhco.
@mastersthesis{Seoane_thesis,
  author = {A.~Seoane},
  school = {Brigham Young University-Idaho},
  title = {{Implementation of orthotropic elasto-plastic model in MOOSE and pellet-cladding interaction simulations}},
  note = {\url{http://tinyurl.com/kj2yhco}},
  month = apr,
  type = {{Senior thesis (Bachelor of Science)}},
  year = 2017
}
[3] T. Adowski. Modeling laser absorption in low-speed reacting flows using adaptive finite elements. Master's thesis, State University of New York at Buffalo, February 2017. http://tinyurl.com/konjhjl.
@mastersthesis{Adowski_thesis,
  author = {T.~Adowski},
  school = {State University of New York at Buffalo},
  title = {{Modeling laser absorption in low-speed reacting flows using adaptive finite elements}},
  note = {\url{http://tinyurl.com/konjhjl}},
  month = feb,
  year = 2017
}
[4] A. B. Oliver. Development of inverse methods for reconstruction of flight environments on ablators. PhD thesis, Purdue University, December 2016. http://tinyurl.com/msavwqa.
@phdthesis{Oliver_thesis,
  author = {A.~B.~Oliver},
  school = {Purdue University},
  title = {{Development of inverse methods for reconstruction of flight environments on ablators}},
  note = {\url{http://tinyurl.com/msavwqa}},
  month = dec,
  year = 2016
}
[5] G. Munglani. Computational mechanics of thin shell biological structures. PhD thesis, ETH-Zürich, December 2016. http://dx.doi.org/10.3929/ethz-a-010875934.
@phdthesis{Munglani_thesis,
  author = {G.~Munglani},
  school = {ETH-Z\"{u}rich},
  title = {{Computational mechanics of thin shell biological structures}},
  note = {\url{http://dx.doi.org/10.3929/ethz-a-010875934}},
  month = dec,
  year = 2016
}
[6] J. Gardner. Modeling radionuclide diffusion using MOOSE, a multiscale, multiphysics platform. Master's thesis, University of South Carolina, December 2016. http://tinyurl.com/jwyvp5u.
@mastersthesis{Gardner_thesis,
  author = {J.~Gardner},
  school = {University of South Carolina},
  title = {{Modeling radionuclide diffusion using MOOSE, a multiscale, multiphysics platform}},
  month = dec,
  year = 2016,
  note = {\url{http://tinyurl.com/jwyvp5u}}
}
[7] P. W. Talbot. Advanced stochastic collocation methods for polynomial chaos in RAVEN. PhD thesis, University of New Mexico, December 2016. http://digitalrepository.unm.edu/ne_etds/57.
@phdthesis{Talbot_thesis,
  author = {P.~W.~Talbot},
  school = {University of New Mexico},
  title = {{Advanced stochastic collocation methods for polynomial chaos in RAVEN}},
  note = {\url{http://digitalrepository.unm.edu/ne_etds/57}},
  month = dec,
  year = 2016
}
[8] N. P. Malaya. Numerical simulation of synthetic, buoyancy-induced columnar vortices. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, December 2016. http://tinyurl.com/zln3tcd.
@phdthesis{Malaya_thesis,
  author = {N.~P.~Malaya},
  school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  title = {{Numerical simulation of synthetic, buoyancy-induced columnar vortices}},
  note = {\url{http://tinyurl.com/zln3tcd}},
  month = dec,
  year = 2016
}
[9] J. French. Improving the function for grain boundary energy interpolation in uranium dioxide. Senior thesis (Bachelor of Science), Brigham Young University-Idaho, December 2016. http://tinyurl.com/gn5h68c.
@mastersthesis{French_2016,
  author = {J.~French},
  school = {Brigham Young University-Idaho},
  title = {{Improving the function for grain boundary energy interpolation in uranium dioxide}},
  note = {\url{http://tinyurl.com/gn5h68c}},
  month = dec,
  type = {{Senior thesis (Bachelor of Science)}},
  year = 2016
}
[10] J.-M. H. Bradley. Foundation for an anisotropic model. Senior thesis (Bachelor of Science), Brigham Young University-Idaho, December 2016. http://tinyurl.com/hlw8w63.
@mastersthesis{Bradley_2016,
  author = {J.-M.~H.~Bradley},
  school = {Brigham Young University-Idaho},
  title = {{Foundation for an anisotropic model}},
  note = {\url{http://tinyurl.com/hlw8w63}},
  month = dec,
  type = {{Senior thesis (Bachelor of Science)}},
  year = 2016
}
[11] P. C. J. Kessels. Finite element discretization of the Spalmart-Allmaras turbulence model. Master's thesis, Delft University of Technology, August 2016. http://tinyurl.com/h2hjrho.
@mastersthesis{Kessels_thesis,
  author = {P.~C.~J.~Kessels},
  school = {Delft University of Technology},
  title = {{Finite element discretization of the Spalmart-Allmaras turbulence model}},
  note = {\url{http://tinyurl.com/h2hjrho}},
  month = aug,
  year = 2016
}
[12] V. M. Laboure. Improved fully-implicit spherical harmonics methods for first and second order forms of the transport equation using Galerkin finite element. PhD thesis, Texas A&M University, August 2016. http://tinyurl.com/zscub44.
@phdthesis{Laboure_thesis,
  author = {V.~M.~Laboure},
  school = {Texas A\&M University},
  title = {{Improved fully-implicit spherical harmonics methods for first and second order forms of the transport equation using Galerkin finite element}},
  note = {\url{http://tinyurl.com/zscub44}},
  month = aug,
  year = 2016
}
[13] A. Jokisaari. Multiphysics phase field modeling of hydrogen diffusion and δ-hydride precipitation in α-zirconium. PhD thesis, University of Michigan, June 2016. http://hdl.handle.net/2027.42/120781.
@phdthesis{Jokisaari_Thesis,
  author = {A.~Jokisaari},
  school = {University of Michigan},
  title = {{Multiphysics phase field modeling of hydrogen diffusion and $\delta$-hydride precipitation in $\alpha$-zirconium}},
  note = {\url{http://hdl.handle.net/2027.42/120781}},
  month = jun,
  year = 2016
}
[14] M. Amundsen. Quasiclassical theory beyond 1D: Supercurrents and topological excitations. Master's thesis, Norwegian University of Science and Technology, May 2016. http://tinyurl.com/kou2lbj.
@mastersthesis{Amundsen_thesis,
  author = {M.~Amundsen},
  school = {Norwegian University of Science and Technology},
  title = {{Quasiclassical theory beyond 1D: Supercurrents and topological excitations}},
  note = {\url{http://tinyurl.com/kou2lbj}},
  month = may,
  year = 2016
}
[15] A. G. Yigitoglu. A methodology for modeling nuclear power plant passive component aging in probabilistic risk assessment under the impact of operating conditions, surveillance and maintenance activities. PhD thesis, The Ohio State University, May 2016. http://tinyurl.com/h9guqzf.
@phdthesis{Yigitoglu_Thesis,
  author = {A.~G.~Yigitoglu},
  school = {The Ohio State University},
  title = {{A methodology for modeling nuclear power plant passive component aging in probabilistic risk assessment under the impact of operating conditions, surveillance and maintenance activities}},
  note = {\url{http://tinyurl.com/h9guqzf}},
  month = may,
  year = 2016
}
[16] M. Peters. On the initiation of boudinage and folding instabilities in layered elasto-visco-plastic solids. PhD thesis, Institut für Geologie der Universität Bern, May 2016. http://tinyurl.com/hweaju9.
@phdthesis{Peters_Thesis,
  author = {M.~Peters},
  school = {Institut f\"{u}r Geologie der Universit\"{a}t Bern},
  title = {{On the initiation of boudinage and folding instabilities in layered elasto-visco-plastic solids}},
  note = {\url{http://tinyurl.com/hweaju9}},
  month = may,
  year = 2016
}
[17] F. Menghini. Advanced computational fluid dynamics models for liquid metal flows. PhD thesis, Università di Bologna, April 2016. http://dx.doi.org/10.6092/unibo/amsdottorato/7505.
@phdthesis{Menghini_thesis,
  author = {F.~Menghini},
  school = {Universit\`{a} di Bologna},
  title = {{Advanced computational fluid dynamics models for liquid metal flows}},
  note = {\url{http://dx.doi.org/10.6092/unibo/amsdottorato/7505}},
  month = apr,
  year = 2016
}
[18] J. Tolliver. Incorporating anisotropic grain boundary energy into a phase field model of uranium dioxide. Senior thesis (Bachelor of Science), Brigham Young University-Idaho, April 2016. http://tinyurl.com/jn2aq8b.
@mastersthesis{Tolliver_Thesis,
  author = {J.~Tolliver},
  school = {Brigham Young University-Idaho},
  title = {{Incorporating anisotropic grain boundary energy into a phase field model of uranium dioxide}},
  note = {\url{http://tinyurl.com/jn2aq8b}},
  month = apr,
  type = {{Senior thesis (Bachelor of Science)}},
  year = 2016
}
[19] A. D'Amario. A reduced-order inverse distance weighting technique for the efficient mesh motion of deformable interfaces and moving shapes in computational problems. Master's thesis, Politecnico di Milano, April 2016. http://hdl.handle.net/10589/118102.
@mastersthesis{DAmario_Thesis,
  author = {A.~D'Amario},
  school = {Politecnico di Milano},
  title = {{A reduced-order inverse distance weighting technique for the efficient mesh motion of deformable interfaces and moving shapes in computational problems}},
  note = {\url{http://hdl.handle.net/10589/118102}},
  month = apr,
  year = 2016
}
[20] Z. Zhang. Finite element methods for interface problems with mesh adaptivity. PhD thesis, Duke University, December 2015. http://tinyurl.com/z52to4j.
@phdthesis{Zhang_Thesis,
  author = {Z.~Zhang},
  school = {Duke University},
  title = {{Finite element methods for interface problems with mesh adaptivity}},
  note = {\url{http://tinyurl.com/z52to4j}},
  month = dec,
  year = 2015
}
[21] J. R. Harter. Predicting thermal conductivity in nuclear fuels using Rattlesnake-based deterministic phonon transport simulations. Master's thesis, Oregon State University, October 2015. http://hdl.handle.net/1957/58143.
@mastersthesis{Harter_Thesis,
  author = {J.~R.~Harter},
  school = {Oregon State University},
  title = {{Predicting thermal conductivity in nuclear fuels using Rattlesnake-based deterministic phonon transport simulations}},
  note = {\url{http://hdl.handle.net/1957/58143}},
  month = oct,
  year = 2015
}
[22] A. Sahai. Modeling of high enthalpy flows for hypersonic re-entry and ground-based arc-jet testing. Master's thesis, University of Illinois at Urbana-Champaign, August 2015. http://tinyurl.com/ovljjwn.
@mastersthesis{Sahai_Thesis,
  author = {A.~Sahai},
  school = {University of Illinois at Urbana-Champaign},
  title = {{Modeling of high enthalpy flows for hypersonic re-entry and ground-based arc-jet testing}},
  note = {\url{http://tinyurl.com/ovljjwn}},
  month = aug,
  year = 2015
}
[23] L. Berger. A low order finite element method for poroelasticity with applications to lung modelling. PhD thesis, University of Oxford, Keble College, June 2015. http://arxiv.org/abs/1609.06892.
@phdthesis{Berger_thesis,
  author = {L.~Berger},
  school = {University of Oxford, Keble College},
  title = {{A low order finite element method for poroelasticity with applications to lung modelling}},
  note = {\url{http://arxiv.org/abs/1609.06892}},
  month = jun,
  year = 2015
}
[24] C. Matthews. Fission Gas Bubble Behavior in Uranium Carbide. PhD thesis, Oregon State University, June 2015. http://tinyurl.com/q97rz6c.
@phdthesis{Matthews_Thesis,
  author = {C.~Matthews},
  school = {Oregon State University},
  title = {{Fission Gas Bubble Behavior in Uranium Carbide}},
  note = {\url{http://tinyurl.com/q97rz6c}},
  month = jun,
  year = 2015
}
[25] N. M. George. Assessment of reactivity equivalence for enhanced accident tolerant fuels in light water reactors. PhD thesis, University of Tennessee, Knoxville, May 2015. http://trace.tennessee.edu/utk_graddiss/3333.
@phdthesis{George_Thesis,
  author = {N.~M.~George},
  school = {University of Tennessee, Knoxville},
  title = {{Assessment of reactivity equivalence for enhanced accident tolerant fuels in light water reactors}},
  note = {\url{http://trace.tennessee.edu/utk_graddiss/3333}},
  month = may,
  year = 2015
}
[26] A. Yankov. Analysis of reactor simulations using surrogate models. PhD thesis, University of Michigan, May 2015. http://tinyurl.com/h32ukat.
@phdthesis{Yankov_Thesis,
  author = {A.~Yankov},
  school = {University of Michigan},
  title = {{Analysis of reactor simulations using surrogate models}},
  note = {\url{http://tinyurl.com/h32ukat}},
  month = may,
  year = 2015
}
[27] C. Perdigou. Stabilité des nappes visqueuses en écoulement ouvert. PhD thesis, L'Université Pierre et Marie Curie, March 2015. http://www.theses.fr/2015PA066136.pdf.
@phdthesis{Perdigou_Thesis,
  author = {C.~Perdigou},
  school = {L'Universit\'{e} Pierre et Marie Curie},
  title = {{Stabilit\'{e} des nappes visqueuses en \'{e}coulement ouvert}},
  note = {\url{http://www.theses.fr/2015PA066136.pdf}},
  month = mar,
  year = 2015
}
[28] R. Vetter. Growth, interaction and packing of thin objects. PhD thesis, ETH-Zürich, March 2015. http://dx.doi.org/10.3929/ethz-a-010414728.
@phdthesis{Vetter_Thesis,
  author = {R.~Vetter},
  school = {ETH-Z\"{u}rich},
  title = {{Growth, interaction and packing of thin objects}},
  note = {\url{http://dx.doi.org/10.3929/ethz-a-010414728}},
  month = mar,
  year = 2015
}
[29] A. Mesgarnejad. Applications of the variational approach to fracture mechanics. PhD thesis, Louisiana State University, December 2014. http://tinyurl.com/jm3evly.
@phdthesis{Mesgarnejad_Thesis,
  author = {A.~Mesgarnejad},
  school = {Louisiana State University},
  title = {{Applications of the variational approach to fracture mechanics}},
  note = {\url{http://tinyurl.com/jm3evly}},
  month = dec,
  year = 2014
}
[30] K. A. L. Gamble. Modeling three-dimensional deformation mechanisms in CANDU reactor fuel elements. Master's thesis, Royal Military College of Canada, May 2014. http://tinyurl.com/ok4zu9w.
@mastersthesis{Gamble_2014,
  author = {K.~A.~L.~Gamble},
  school = {Royal Military College of Canada},
  title = {{Modeling three-dimensional deformation mechanisms in CANDU reactor fuel elements}},
  note = {\url{http://tinyurl.com/ok4zu9w}},
  month = may,
  year = 2014
}
[31] K. Steih. Reduced basis methods for time-periodic parametric partial differential equations. PhD thesis, Universität Ulm, April 2014. http://vts.uni-ulm.de/docs/2014/9093/vts_9093_13686.pdf.
@phdthesis{Steih_2014,
  author = {K.~Steih},
  school = {Universit\"{a}t Ulm},
  title = {{Reduced basis methods for time-periodic parametric partial differential equations}},
  note = {\url{http://vts.uni-ulm.de/docs/2014/9093/vts_9093_13686.pdf}},
  month = apr,
  year = 2014
}
[32] M. Bozzetto. Characterization of the flow instability in patient-specific arteriovenous fistulae for hemodialysis. PhD thesis, Politecnico di Milano, 2014. http://tinyurl.com/hoz5aw5.
@phdthesis{Bozzetto_2014,
  author = {M.~Bozzetto},
  school = {Politecnico di Milano},
  title = {{Characterization of the flow instability in patient-specific arteriovenous fistulae for hemodialysis}},
  note = {\url{http://tinyurl.com/hoz5aw5}},
  year = 2014
}
[33] C. Ryser. Cold ice in an alpine glacier and ice dynamics at the margin of the Greenland ice sheet. PhD thesis, ETH-Zürich, 2014. http://tinyurl.com/nagulx5.
@phdthesis{Ryser_Thesis,
  author = {C.~Ryser},
  school = {ETH-Z\"{u}rich},
  title = {{Cold ice in an alpine glacier and ice dynamics at the margin of the Greenland ice sheet}},
  note = {\url{http://tinyurl.com/nagulx5}},
  year = 2014
}
[34] L. Dazhong. Lower and upper bound limit analyses for stability problems in geotechnical engineering. PhD thesis, The Hong Kong Polytechnic University, December 2013. http://tinyurl.com/nk54jcm.
@phdthesis{Dazhong_Thesis,
  author = {L.~Dazhong},
  school = {The Hong Kong Polytechnic University},
  title = {{Lower and upper bound limit analyses for stability problems in geotechnical engineering}},
  note = {\url{http://tinyurl.com/nk54jcm}},
  month = dec,
  year = 2013
}
[35] L. Wieme. Perception based heterogeneous subsurface scattering for film. Master's Thesis, Rochester Institute of Technology, August 2013. https://ritdml.rit.edu/handle/1850/16776.
@mastersthesis{Wieme_Thesis,
  author = {L.~Wieme},
  type = {{Master's Thesis}},
  school = {Rochester Institute of Technology},
  title = {{Perception based heterogeneous subsurface scattering for film}},
  note = {\url{https://ritdml.rit.edu/handle/1850/16776}},
  month = aug,
  year = 2013
}
[36] D. F. M. Vasconcelos. Modelo de campo de fases Allen--Cahn baseado em resíduo para a simulação paralela e adaptativa de escoamentos incompressíveis. Master's Thesis, COPPE Universidade Federal do Rio de Janeiro, August 2013. http://tinyurl.com/q892don.
@mastersthesis{Vasconselos_Thesis,
  author = {D.~F.~M.~Vasconcelos},
  type = {{Master's Thesis}},
  school = {COPPE Universidade Federal do Rio de Janeiro},
  title = {{Modelo de campo de fases Allen--Cahn baseado em res\'{i}duo para a simula\c{c}\~{a}o paralela e adaptativa de escoamentos incompress\'{i}veis}},
  note = {\url{http://tinyurl.com/q892don}},
  month = aug,
  year = 2013
}
[37] Z. Petrou. Thermo-electro-mechanical behavior of ferroelectric nanodots. Master's Thesis, ASE-EM dept., The University of Texas at Austin, August 2013. http://hdl.handle.net/2152/21783.
@mastersthesis{Petrou_Thesis,
  author = {Z.~Petrou},
  type = {{Master's Thesis}},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{Thermo-electro-mechanical behavior of ferroelectric nanodots}},
  note = {\url{http://hdl.handle.net/2152/21783}},
  month = aug,
  year = 2013
}
[38] P.-Y. Trépanier. Modélisation radiobiologique pour la planification des traitements en radiothérapie à partir de données d'imagerie spécifiques aux patients. PhD thesis, Université de Montréal, July 2013. http://tinyurl.com/hlrnakp.
@phdthesis{Trepanier_2013,
  author = {P.-Y.~Tr\'{e}panier},
  school = {Universit\'{e} de Montr\'{e}al},
  title = {{Mod\'{e}lisation radiobiologique pour la planification des traitements en radioth\'{e}rapie \`{a} partir de donn\'{e}es d'imagerie sp\'{e}cifiques aux patients}},
  note = {\url{http://tinyurl.com/hlrnakp}},
  month = jul,
  year = 2013
}
[39] A. S. Butterfield. Exploration of the phase field framework MARMOT to include anisotropic grain boundaries with molecular dynamics. Senior thesis (Bachelor of Science), Brigham Young University-Idaho, July 2013. http://dx.doi.org/10.2172/1093887.
@phdthesis{Butterfield_2013,
  author = {A.~S.~Butterfield},
  school = {Brigham Young University-Idaho},
  title = {{Exploration of the phase field framework MARMOT to include anisotropic grain boundaries with molecular dynamics}},
  note = {\url{http://dx.doi.org/10.2172/1093887}},
  month = jul,
  type = {{Senior thesis (Bachelor of Science)}},
  year = 2013
}
[40] M. C. Teague. Characterization and modeling of high burn-up mixed oxide fuel. PhD thesis, Colorado School of Mines, May 2013. http://hdl.handle.net/10217/78991.
@phdthesis{Teague_2013,
  author = {M.~C.~Teague},
  school = {Colorado School of Mines},
  title = {{Characterization and modeling of high burn-up mixed oxide fuel}},
  note = {\url{http://hdl.handle.net/10217/78991}},
  month = may,
  year = 2013
}
[41] J. Huber. Interior-point methods for PDE-constrained optimization. PhD thesis, University of Basel, Switzerland, April 23, 2013. http://tinyurl.com/owdxlhu.
@phdthesis{Huber_2013,
  author = {J.~Huber},
  school = {University of Basel, Switzerland},
  title = {{Interior-point methods for PDE-constrained optimization}},
  note = {\url{http://tinyurl.com/owdxlhu}},
  month = apr # {~23,},
  year = 2013
}
[42] V. V. Garg. Coupled flow systems, adjoint techniques and uncertainty quantification. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, August 2012. http://tinyurl.com/h6gu7sf.
@phdthesis{Garg_thesis,
  author = {V.~V.~Garg},
  school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  title = {{Coupled flow systems, adjoint techniques and uncertainty quantification}},
  note = {\url{http://tinyurl.com/h6gu7sf}},
  month = aug,
  year = 2012
}
[43] A. L. Rossa. Parallel adaptive simulation of incompressible viscous flows using stabilized finite elements. PhD thesis, Department of Civil Engineering, COPPE/UFRJ, March 2012. http://tinyurl.com/ovqqwou.
@phdthesis{Rossa_thesis,
  author = {A.~L.~Rossa},
  school = {Department of Civil Engineering, COPPE/UFRJ},
  title = {{Parallel adaptive simulation of incompressible viscous flows using stabilized finite elements}},
  note = {\url{http://tinyurl.com/ovqqwou}},
  month = mar,
  year = 2012
}
[44] G. Bornia. Analysis of optimal control problems for the incompressible MHD equations and implementation in a finite element multiphysics code. PhD thesis, Università di Bologna, 2012. http://tinyurl.com/zfo898t.
@phdthesis{Bornia_thesis,
  author = {G.~Bornia},
  school = {Universit\`{a} di Bologna},
  title = {{Analysis of optimal control problems for the incompressible MHD equations and implementation in a finite element multiphysics code}},
  note = {\url{http://tinyurl.com/zfo898t}},
  year = 2012
}
[45] M. A. Puscas. Simulation d'écoulements multiphasiques en milieu poreux avec résolution par la méthode Galerkin discontinue (Multiphase flow simulations in porous media with resolution for the discontinuous Galerkin method). Master's thesis, Ingénieurs sup Galilée--Université Paris Nord, Institut de Radioprotection et de Sûreté Nucléaire, September 24, 2011. http://tinyurl.com/jsftcx8.
@mastersthesis{Puscas_2011,
  author = {M.~A.~Puscas},
  school = {Ing\'{e}nieurs sup Galil\'{e}e--Universit\'{e} Paris Nord, Institut de Radioprotection et de S\^{u}ret\'{e} Nucl\'{e}aire},
  title = {{Simulation d'\'{e}coulements multiphasiques en milieu poreux avec r\'{e}solution par la m\'{e}thode Galerkin discontinue (Multiphase flow simulations in porous media with resolution for the discontinuous Galerkin method)}},
  note = {\url{http://tinyurl.com/jsftcx8}},
  month = sep # {~24,},
  year = 2011
}
[46] K. Lee. Understanding new regimes for light-matter interactions. PhD thesis, Massachusetts Institute of Technology, June 2011. http://dspace.mit.edu/handle/1721.1/66018.
@phdthesis{Lee_dissertation,
  author = {K.~Lee},
  school = {Massachusetts Institute of Technology},
  title = {{Understanding new regimes for light-matter interactions}},
  note = {\url{http://dspace.mit.edu/handle/1721.1/66018}},
  month = jun,
  year = 2011
}
[47] J. J. Camata. Estratégias computacionais de alto desempenho aplicadas ao método dos elementos finitos. PhD thesis, COPPE Universidade Federal do Rio de Janeiro, May 2011. http://tinyurl.com/zdrfkqo.
@phdthesis{Camata_2011,
  author = {J.~J.~Camata},
  school = {COPPE Universidade Federal do Rio de Janeiro},
  title = {{Estrat\'{e}gias computacionais de alto desempenho aplicadas ao m\'{e}todo dos elementos finitos}},
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[49] L. Nagler. Simulation of sound transmission through poroelastic plate-like structures. PhD thesis, Graz University of Technology, Institute of Applied Mechanics, February 2011. http://tinyurl.com/jdbebbx.
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[50] J. A. Kallen-Brown. Computational methods for ice flow simulation. PhD thesis, ETH-Zürich, 2011. http://dx.doi.org/10.3929/ethz-a-007316245.
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[51] A. Augier. Modelling and numerical simulation of porous media for the soundproofing of plane cabins. PhD thesis, Université Paris Sud XI, November 2010. https://hal.archives-ouvertes.fr/tel-00562015.
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  author = {A.~Augier},
  school = {Universit\'{e} Paris Sud XI},
  title = {{Modelling and numerical simulation of porous media for the soundproofing of plane cabins}},
  note = {\url{https://hal.archives-ouvertes.fr/tel-00562015}},
  month = nov,
  year = 2010
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[52] V. S. Mahadevan. High resolution numerical methods for coupled non-linear multi-physics simulations with applications in reactor analysis. PhD thesis, Texas A&M University, August 2010. http://tinyurl.com/psztmhu.
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  author = {V.~S.~Mahadevan},
  school = {Texas A\&M University},
  title = {{High resolution numerical methods for coupled non-linear multi-physics simulations with applications in reactor analysis}},
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[53] M. Nenning. Infinite Elements for Elasto- and Poroelastodynamics. PhD thesis, Graz University of Technology, Institute of Applied Mechanics, August 2010. http://tinyurl.com/zy5mv4u.
@phdthesis{Nenning_Dissertation,
  author = {M.~Nenning},
  school = {Graz University of Technology, Institute of Applied Mechanics},
  title = {{Infinite Elements for Elasto- and Poroelastodynamics}},
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[54] J. A. Dec. Three dimensional finite element ablative thermal response analysis applied to heatshield penetration design. PhD thesis, Georgia Institute of Technology, May 2010. https://smartech.gatech.edu/handle/1853/39588.
@phdthesis{Dec_2010,
  author = {J.~A.~Dec},
  school = {Georgia Institute of Technology},
  title = {{Three dimensional finite element ablative thermal response analysis applied to heatshield penetration design}},
  note = {\url{https://smartech.gatech.edu/handle/1853/39588}},
  month = may,
  year = 2010
}
[55] A. Pétrau. Multidimensional numerical simulation of estuarian river flows. PhD thesis, Université de Pau et des Pays de l'Adour, December 2009. https://tel.archives-ouvertes.fr/tel-00453696v2.
@phdthesis{Petrau_2009,
  author = {A.~P\'{e}trau},
  school = {Universit\'{e} de Pau et des Pays de l'Adour},
  title = {{Multidimensional numerical simulation of estuarian river flows}},
  note = {\url{https://tel.archives-ouvertes.fr/tel-00453696v2}},
  month = dec,
  year = 2009
}
[56] E. Petrolati. Study and Optimization of Polariton LASERs. PhD thesis, Università Degli Studi Di Roma “Tor Vergata”, December 2008. http://tinyurl.com/zlpkvl7.
@phdthesis{Petrolati_Dissertation,
  author = {E.~Petrolati},
  school = {Universit\`{a} Degli Studi Di Roma ``Tor Vergata''},
  title = {{Study and Optimization of Polariton LASERs}},
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  year = 2008
}
[57] D. J. Knezevic. Analysis and Implementation of Numerical Methods for Simulating Dilute Polymeric Fluids. PhD thesis, University of Oxford, Balliol College, December 2008. http://tinyurl.com/jxnwdwo.
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  year = 2008
}
[58] K. Nam. Optimization of paths and locations of water quality monitoring systems in surface water environments. PhD thesis, Georgia Institute of Technology, August 2008. http://tinyurl.com/pz5xlzz.
@phdthesis{Nam_2008,
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  school = {Georgia Institute of Technology},
  title = {{Optimization of paths and locations of water quality monitoring systems in surface water environments}},
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[59] R. H. Stogner. Parallel Adaptive C1 Macro-Elements for Nonlinear Thin Film and Non-Newtonian Flow Problems. PhD thesis, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, August 2008. http://tinyurl.com/hlwhktf.
@phdthesis{Stogner_Dissertation,
  author = {R.~H.~Stogner},
  school = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  title = {{Parallel Adaptive $C^1$ Macro-Elements for Nonlinear Thin Film and Non-Newtonian Flow Problems}},
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  month = aug,
  year = 2008
}
[60] F. Rammerstorfer. Simulation von Wellenausbreitung unter Verwendung von `Perfectly Matched Layers'. PhD thesis, Technische Universität Graz, June 2008. http://tinyurl.com/os2u7fn.
@phdthesis{Rammerstorfer_2008,
  author = {F.~Rammerstorfer},
  school = {Technische Universit\"{a}t Graz},
  title = {{Simulation von Wellenausbreitung unter Verwendung von `Perfectly Matched Layers'}},
  note = {\url{http://tinyurl.com/os2u7fn}},
  month = jun,
  year = 2008
}
[61] S. Wang. Krylov subspace methods for topology optimization on adaptive meshes. PhD thesis, University of Illinois at Urbana-Champaign, May 2008. http://tinyurl.com/o5pmpu6.
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  author = {S.~Wang},
  school = {University of Illinois at Urbana-Champaign},
  title = {{Krylov subspace methods for topology optimization on adaptive meshes}},
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}
[62] J. W. Peterson. Parallel Adaptive Finite Element Methods for Problems in Natural Convection. PhD thesis, ASE-EM dept., The University of Texas at Austin, May 2008. http://tinyurl.com/hc3upez.
@phdthesis{Peterson_Dissertation,
  author = {J.~W.~Peterson},
  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{Parallel Adaptive Finite Element Methods for Problems in Natural Convection}},
  note = {\url{http://tinyurl.com/hc3upez}},
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  year = 2008
}
[63] B. S. Kirk. Adaptive Finite Element Simulation of Flow and Transport Applications on Parallel Computers. PhD thesis, ASE-EM dept., The University of Texas at Austin, May 2007. http://tinyurl.com/j7erk2u.
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  school = {ASE-EM dept., The University of Texas at Austin},
  title = {{Adaptive Finite Element Simulation of Flow and Transport Applications on Parallel Computers}},
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  year = 2007
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[64] S. Petersen. Adaptive finite und infinite Elementemethoden in der Akustik. PhD thesis, Technischen Universität Hamburg-Harburg, December 2006. http://tinyurl.com/hdz4ysc.
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  author = {S.~Petersen},
  school = {Technischen Universit\"{a}t Hamburg-Harburg},
  title = {{Adaptive finite und infinite Elementemethoden in der Akustik}},
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[65] D. Dreyer. Efficient infinite elements for exterior acoustics. PhD thesis, Technischen Universität Hamburg-Harburg, September 2004. http://tinyurl.com/zy3zrga.
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  author = {J.~W.~Peterson},
  type = {{Master's Report}},
  school = {ASE-EM dept., The University of Texas at Austin},
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  year = 2003
}

Preprints

[1] B. E. Griffith and X. Luo. Hybrid finite difference/finite element version of the immersed boundary method. Numerical Methods in Biomedical Engineering, May 2017. http://dx.doi.org/10.1002/cnm.2888, ArXiv e-print: http://arxiv.org/abs/1612.05916.
@article{Griffith_2017,
  author = {B.~E.~Griffith and X.~Luo},
  title = {{Hybrid finite difference/finite element version of the immersed boundary method}},
  journal = {Numerical Methods in Biomedical Engineering},
  month = may,
  year = 2017,
  note = {\url{http://dx.doi.org/10.1002/cnm.2888}, ArXiv e-print: \url{http://arxiv.org/abs/1612.05916}}
}
[2] M. Cacace and A. B. Jacquey. Flexible parallel implicit modelling of coupled thermal-hydraulic-mechanical processes in fractured rocks. Solid Earth Discussions, April 2017. http://dx.doi.org/10.5194/se-2017-33.
@article{Cacace_2017,
  author = {M.~Cacace and A.~B.~Jacquey},
  title = {{Flexible parallel implicit modelling of coupled thermal-hydraulic-mechanical processes in fractured rocks}},
  journal = {Solid Earth Discussions},
  month = apr,
  year = 2017,
  note = {\url{http://dx.doi.org/10.5194/se-2017-33}}
}
[3] Y. Wang, S. Schunert, M. DeHart, R. Martineau, and W. Zheng. Hybrid PN-SN with Lagrange multiplier and upwinding for the multiscale transport capability in RattleSnake. Progress in Nuclear Energy, April 2017. http://doi.org/10.1016/j.pnucene.2017.03.020.
@article{Wang_2017,
  author = {Y.~Wang and S.~Schunert and M.~DeHart and R.~Martineau and W.~Zheng},
  title = {{Hybrid $P_N$-$S_N$ with Lagrange multiplier and upwinding for the multiscale transport capability in RattleSnake}},
  journal = {Progress in Nuclear Energy},
  month = apr,
  year = 2017,
  note = {\url{http://doi.org/10.1016/j.pnucene.2017.03.020}}
}
[4] F. Ballarin, E. Faggiano, A. Manzoni, A. Quarteroni, G. Rozza, S. Ippolito, C. Antona, and R. Scrofani. Numerical modeling of hemodynamics scenarios of patient-specific coronary artery bypass grafts. Biomechanics and Modeling in Mechanobiology, March 2017. http://dx.doi.org/10.1007/s10237-017-0893-7.
@article{Ballarin_2017,
  author = {F.~Ballarin and E.~Faggiano and A.~Manzoni and A.~Quarteroni and G.~Rozza and S.~Ippolito and C.~Antona and R.~Scrofani},
  title = {{Numerical modeling of hemodynamics scenarios of patient-specific coronary artery bypass grafts}},
  journal = {Biomechanics and Modeling in Mechanobiology},
  month = mar,
  year = 2017,
  note = {\url{http://dx.doi.org/10.1007/s10237-017-0893-7}}
}
[5] L. Luo, Q. Zhang, X.-P. Wang, and X.-C. Cai. A parallel finite element method for 3D two-phase moving contact line problems in complex domains. Journal of Scientific Computing, February 2017. http://dx.doi.org/10.1007/s10915-017-0391-1.
@article{Luo_2017b,
  author = {L.~Luo and Q.~Zhang and X.-P.~Wang and X.-C.~Cai},
  title = {{A parallel finite element method for 3D two-phase moving contact line problems in complex domains}},
  journal = {Journal of Scientific Computing},
  month = feb,
  year = 2017,
  note = {\url{http://dx.doi.org/10.1007/s10915-017-0391-1}}
}
[6] M. O. Delchini, J. C. Ragusa, and J. Ferguson. Viscous regularization of the full set of nonequilibrium-diffusion gray radiation-hydrodynamic equations. International Journal for Numerical Methods in Fluids, February 2017. http://dx.doi.org/10.1002/fld.4371.
@article{Delchini_2017,
  author = {M.~O.~Delchini and J.~C.~Ragusa and J.~Ferguson},
  title = {Viscous regularization of the full set of nonequilibrium-diffusion gray radiation-hydrodynamic equations},
  journal = {International Journal for Numerical Methods in Fluids},
  month = feb,
  year = 2017,
  note = {\url{http://dx.doi.org/10.1002/fld.4371}}
}
[7] J. P. Senecal and W. Ji. Approaches for mitigating over-solving in multiphysics simulations. International Journal for Numerical Methods in Engineering, January 2017. http://dx.doi.org/10.1002/nme.5516.
@article{Senecal_2017,
  author = {J.~P.~Senecal and W.~Ji},
  title = {Approaches for mitigating over-solving in multiphysics simulations},
  journal = {International Journal for Numerical Methods in Engineering},
  month = jan,
  year = 2017,
  note = {\url{http://dx.doi.org/10.1002/nme.5516}}
}
[8] L. Berger, R. Bordas, D. Kay, and S. Tavener. A stabilized finite element method for finite-strain three-field poroelasticity. Computational Mechanics, 2017. http://dx.doi.org/10.1007/s00466-017-1381-8.
@article{Berger_2017,
  author = {L.~Berger and R.~Bordas and D.~Kay and S.~Tavener},
  title = {A stabilized finite element method for finite-strain three-field poroelasticity},
  journal = {Computational Mechanics},
  year = 2017,
  note = {\url{http://dx.doi.org/10.1007/s00466-017-1381-8}}
}
[9] D. Mejia, A. Moreno, O. Ruiz-Salguero, and I. Barandiaran. Appraisal of open software for finite element simulation of 2D metal sheet laser cut. International Journal on Interactive Design and Manufacturing, pages 1--12, March 2016. http://dx.doi.org/10.1007/s12008-016-0308-5.
@article{Mejia_2016,
  author = {D.~Mejia and A.~Moreno and O.~Ruiz-Salguero and I.~Barandiaran},
  title = {{Appraisal of open software for finite element simulation of 2D metal sheet laser cut}},
  journal = {International Journal on Interactive Design and Manufacturing},
  month = mar,
  year = 2016,
  pages = {1--12},
  note = {\url{http://dx.doi.org/10.1007/s12008-016-0308-5}}
}

2017

[1] M. O. Delchini, J. C. Ragusa, and R. A. Berry. Simulations of single- and two-phase shock tubes and gravity-driven wave problems with the RELAP-7 nuclear reactor system analysis code. Nuclear Engineering and Design, 319:106--116, August 2017. http://dx.doi.org/10.1016/j.nucengdes.2017.04.034.
@article{Delchini_2017b,
  author = {M.~O.~Delchini and J.~C.~Ragusa and R.~A.~Berry},
  title = {{Simulations of single- and two-phase shock tubes and gravity-driven wave problems with the RELAP-7 nuclear reactor system analysis code}},
  journal = {Nuclear Engineering and Design},
  month = aug,
  year = 2017,
  volume = 319,
  pages = {106--116},
  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2017.04.034}}
}
[2] B. E. Berry and P. C. Millett. Phase-field simulations of the impact of bimodal pore size distributions on solid-state densification. Journal of Nuclear Materials, 491:48--54, August 2017. http://dx.doi.org/10.1016/j.jnucmat.2017.04.050.
@article{Berry_2017,
  author = {B.~E.~Berry and P.~C.~Millett},
  title = {Phase-field simulations of the impact of bimodal pore size distributions on solid-state densification},
  journal = {Journal of Nuclear Materials},
  month = aug,
  volume = 491,
  pages = {48--54},
  year = 2017,
  note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2017.04.050}}
}
[3] K. A. Gamble, T. Barani, D. Pizzocri, J. D. Hales, K. A. Terrani, and G. Pastore. An investigation of FeCrAl cladding behavior under normal operating and loss of coolant conditions. Journal of Nuclear Materials, 491:55--66, August 2017. http://dx.doi.org/10.1016/j.jnucmat.2017.04.039.
@article{Gamble_2017,
  author = {K.~A.~Gamble and T.~Barani and D.~Pizzocri and J.~D.~Hales and K.~A.~Terrani and G.~Pastore},
  title = {{An investigation of FeCrAl cladding behavior under normal operating and loss of coolant conditions}},
  journal = {Journal of Nuclear Materials},
  month = aug,
  year = 2017,
  volume = 491,
  pages = {55--66},
  note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2017.04.039}}
}
[4] M. R. Tonks, D. Andersson, S. R. Phillpot, Y. Zhang, R. Williamson, C. R. Stanek, B. P. Uberuaga, and S. L. Hayes. Mechanistic materials modeling for nuclear fuel performance. Annals of Nuclear Energy, 105:11--24, July 2017. http://dx.doi.org/10.1016/j.anucene.2017.03.005.
@article{Tonks_2017,
  author = {M.~R.~Tonks and D.~Andersson and S.~R.~Phillpot and Y.~Zhang and R.~Williamson and C.~R.~Stanek and B.~P.~Uberuaga and S.~L.~Hayes},
  title = {{Mechanistic materials modeling for nuclear fuel performance}},
  journal = {Annals of Nuclear Energy},
  month = jul,
  year = 2017,
  volume = 105,
  pages = {11--24},
  note = {\url{http://dx.doi.org/10.1016/j.anucene.2017.03.005}}
}
[5] P. Medvedev, S. Novascone, R. Gardner, and A. Casagranda. Status of development of the BISON code for fast reactor fuel performance modeling. In International Conference on Fast Reactors and Related Fuel Cycles: Next Generation Nuclear Systems for Sustainable Development (FR17), Yekaterinburg, Russia, June 26--29, 2017. International Atomic Energy Agency. Paper IAEA-CN-245-215, http://tinyurl.com/hoddh7s.
@inproceedings{Medvedev_2017,
  author = {P.~Medvedev and S.~Novascone and R.~Gardner and A.~Casagranda},
  title = {{Status of development of the BISON code for fast reactor fuel performance modeling}},
  booktitle = {{International Conference on Fast Reactors and Related Fuel Cycles: Next Generation Nuclear Systems for Sustainable Development (FR17)}},
  address = {Yekaterinburg, Russia},
  publisher = {International Atomic Energy Agency},
  month = jun # {~26--29,},
  year = 2017,
  note = {Paper IAEA-CN-245-215, \url{http://tinyurl.com/hoddh7s}}
}
[6] C. Matthews, J. Galloway, C. Unal, S. Novascone, and R. Williamson. BISON for metallic fuels modelling. In International Conference on Fast Reactors and Related Fuel Cycles: Next Generation Nuclear Systems for Sustainable Development (FR17), Yekaterinburg, Russia, June 26--29, 2017. International Atomic Energy Agency. Paper IAEA-CN-245-366, http://tinyurl.com/glp92b3.
@inproceedings{Matthews_2017,
  author = {C.~Matthews and J.~Galloway and C.~Unal and S.~Novascone and R.~Williamson},
  title = {{BISON for metallic fuels modelling}},
  booktitle = {{International Conference on Fast Reactors and Related Fuel Cycles: Next Generation Nuclear Systems for Sustainable Development (FR17)}},
  address = {Yekaterinburg, Russia},
  publisher = {International Atomic Energy Agency},
  month = jun # {~26--29,},
  year = 2017,
  note = {Paper IAEA-CN-245-366, \url{http://tinyurl.com/glp92b3}}
}
[7] K. Ahmed, M. Tonks, Y. Zhang, B. Biner, and A. El-Azab. Particle-grain boundary interactions: A phase field study. Computational Materials Science, 134:25--37, June 2017. http://dx.doi.org/10.1016/j.commatsci.2017.03.025.
@article{Ahmed_2017,
  author = {K.~Ahmed and M.~Tonks and Y.~Zhang and B.~Biner and A.~El-Azab},
  title = {{Particle-grain boundary interactions: A phase field study}},
  journal = {Computational Materials Science},
  month = jun,
  year = 2017,
  volume = 134,
  pages = {25--37},
  note = {\url{http://dx.doi.org/10.1016/j.commatsci.2017.03.025}}
}
[8] S. Schunert, Y. Wang, F. Gleicher, J. Ortensi, B. Baker, V. Laboure, C. Wang, M. DeHart, and R. Martineau. A flexible nonlinear diffusion acceleration method for the SN transport equations discretized with discontinuous finite elements. Journal of Computational Physics, 338:107--136, June 2017. http://dx.doi.org/10.1016/j.jcp.2017.01.070.
@article{Schunert_2017,
  author = {S.~Schunert and Y.~Wang and F.~Gleicher and J.~Ortensi and B.~Baker and V.~Laboure and C.~Wang and M.~DeHart and R.~Martineau},
  title = {{A flexible nonlinear diffusion acceleration method for the $S_N$ transport equations discretized with discontinuous finite elements}},
  journal = {Journal of Computational Physics},
  month = jun,
  year = 2017,
  volume = 338,
  pages = {107--136},
  note = {\url{http://dx.doi.org/10.1016/j.jcp.2017.01.070}}
}
[9] M. Lesueur, M. C. Casadiego, T. Poulet, and M. Veveakis. Framework for multiscale flow simulation of deformable rocks. In E. Papamichos, P. Papanastasiou, E. Pasternak, and A. Dyskin, editors, Bifurcation and degradation of geomaterials with engineering applications: Proceedings of the 11th International Workshop on Bifurcation and Degradation in Geomaterials (IWBDG 2017), pages 475--480, Limassol, Cyprus, May 21--25, 2017. http://dx.doi.org/10.1007/978-3-319-56397-8_60.
@inproceedings{Lesueur_2017,
  author = {M.~Lesueur and M.~C.~Casadiego and T.~Poulet and M.~Veveakis},
  title = {Framework for multiscale flow simulation of deformable rocks},
  booktitle = {{Bifurcation and degradation of geomaterials with engineering applications: Proceedings of the 11th International Workshop on Bifurcation and Degradation in Geomaterials (IWBDG 2017)}},
  address = {Limassol, Cyprus},
  editor = {E.~Papamichos and P.~Papanastasiou and E.~Pasternak and A.~Dyskin},
  pages = {475--480},
  month = may # {~21--25,},
  year = 2017,
  note = {\url{http://dx.doi.org/10.1007/978-3-319-56397-8_60}}
}
[10] H. Sahasrabudhe, B. Novakovic, J. Nakamura, S. Fallahi, M. Povolotskyi, G. Klimeck, R. Rahman, and M. J. Manfra. Optimization of edge state velocity in the integer quantum Hall regime. ArXiv e-print, May 2017. https://arxiv.org/abs/1705.07005.
@misc{Sahasrabudhe_2017,
  author = {H.~Sahasrabudhe and B.~Novakovic and J.~Nakamura and S.~Fallahi and M.~Povolotskyi and G.~Klimeck and R.~Rahman and M.~J.~Manfra},
  title = {Optimization of edge state velocity in the integer quantum {H}all regime},
  month = may,
  year = 2017,
  howpublished = {ArXiv e-print},
  note = {\url{https://arxiv.org/abs/1705.07005}}
}
[11] K. Lahabi, M. Amundsen, J. A. Ouassou, E. Beukers, M. Pleijster, J. Linder, P. Alkemade, and J. Aarts. Controlling supercurrents and their spatial distribution in ferromagnets. ArXiv e-print, May 2017. https://arxiv.org/abs/1705.07020.
@misc{Lahabi_2017,
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2016

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  author = {H.~Zhao and H.~Zhang and L.~Zou and R.~Martineau and Q.~Wu},
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  title = {{Standalone BISON fuel performance results for Watts Bar Unit 1, cycles 1-3}},
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[77] K. Smetana and A. T. Patera. Optimal local approximation spaces for component-based static condensation procedures. SIAM Journal on Scientific Computing, 38:A3318--A3356, 2016. http://dx.doi.org/10.1137/15M1009603.
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[78] L. Berger, R. Bordas, K. Burrowes, V. Grau, S. Tavener, and D. Kay. A poroelastic model coupled to a fluid network with applications in lung modelling. International Journal for Numerical Methods in Biomedical Engineering, 32(1):e02731 (17 pages), January 2016. http://dx.doi.org/10.1002/cnm.2731.
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  title = {A poroelastic model coupled to a fluid network with applications in lung modelling},
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[79] X. Jiang, J. Li, X. Zhao, J. Qin, D. Karpeev, J. Hernandez-Ortiz, J. de Pablo, and O. Heinonen. An O(N) and parallel approach to integral problems by a kernel-independent fast multipole method: Application to polarization and magnetization of interacting particles. The Journal of Chemical Physics, 145:064307 (12 pages), 2016. http://dx.doi.org/10.1063/1.4960436, ArXiv e-print: http://arxiv.org/abs/1605.01715.
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  title = {{An $O(N)$ and parallel approach to integral problems by a kernel-independent fast multipole method: Application to polarization and magnetization of interacting particles}},
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[80] F. Guillén-González and J. R. Rodríguez Galván. On the stability of approximations for the Stokes problem using different finite element spaces for each component of the velocity. Applied Numerical Mathematics, 99:51--76, January 2016. http://dx.doi.org/10.1016/j.apnum.2015.07.002, ArXiv preprint: 1411.7930, Dec. 2014, http://arxiv.org/abs/1411.7930.
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  title = {{On the stability of approximations for the Stokes problem using different finite element spaces for each component of the velocity}},
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[81] L. Einkemmer and A. Ostermann. Overcoming order reduction in diffusion-reaction splitting. Part 2: oblique boundary conditions. SIAM Journal on Scientific Computing, 38(6):A3741--A3757, 2016. http://dx.doi.org/10.1137/16M1056250, ArXiv e-print: http://arxiv.org/abs/1601.02288.
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  title = {{Overcoming order reduction in diffusion-reaction splitting. Part 2: oblique boundary conditions}},
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[82] H. Guo, C. L. Phillips, T. Peterka, D. Karpeyev, and A. Glatz. Extracting, tracking, and visualizing magnetic flux vortices in 3D complex-valued superconductor simulation data. IEEE Transactions on Visualization and Computer Graphics, 22(1):827--836, January 2016. http://dx.doi.org/10.1109/TVCG.2015.2466838.
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  title = {{Extracting, tracking, and visualizing magnetic flux vortices in 3D complex-valued superconductor simulation data}},
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2015

[1] B. Fromm, Y. Zhang, D. Schwen, D. Brown, and R. Pokharel. Assessment of MARMOT grain growth model. Technical Report INL/EXT-15-37533, Idaho National Laboratory, December 2015. http://dx.doi.org/10.2172/1261063.
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  author = {B.~Fromm and Y.~Zhang and D.~Schwen and D.~Brown and R.~Pokharel},
  title = {{Assessment of MARMOT grain growth model}},
  institution = {Idaho National Laboratory},
  day = 1,
  month = dec,
  year = 2015,
  number = {INL/EXT-15-37533},
  note = {\url{http://dx.doi.org/10.2172/1261063}}
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[2] S. R. Novascone, B. W. Spencer, J. D. Hales, and R. L. Williamson. Evaluation of coupling approaches for thermomechanical simulations. Nuclear Engineering and Design, 295:910--921, December 2015. http://dx.doi.org/10.1016/j.nucengdes.2015.07.005.
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  title = {Evaluation of coupling approaches for thermomechanical simulations},
  journal = {Nuclear Engineering and Design},
  volume = 295,
  month = dec,
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  pages = {910--921},
  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2015.07.005}}
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[3] A. M. Jokisaari and K. Thornton. General method for incorporating CALPHAD free energies of mixing into phase field models: Application to the α-zirconium/δ-hydride system. Calphad, 51:334--343, December 2015. http://dx.doi.org/10.1016/j.calphad.2015.10.011.
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  title = {{General method for incorporating CALPHAD free energies of mixing into phase field models: Application to the $\alpha$-zirconium/$\delta$-hydride system}},
  journal = {Calphad},
  month = dec,
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  volume = 51,
  pages = {334--343},
  note = {\url{http://dx.doi.org/10.1016/j.calphad.2015.10.011}}
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[4] D. Dobbelaere, D. De Zutter, J. Van Hese, J. Sercu, T. Boonen, and H. Rogier. A Calderón multiplicative preconditioner for the electromagnetic Poincaré--Steklov operator of a heterogeneous domain with scattering applications. Journal of Computational Physics, 303:355--371, December 2015. http://dx.doi.org/10.1016/j.jcp.2015.09.052.
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  title = {{A Calder\'{o}n multiplicative preconditioner for the electromagnetic Poincar\'{e}--Steklov operator of a heterogeneous domain with scattering applications}},
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  month = dec,
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  note = {\url{http://dx.doi.org/10.1016/j.jcp.2015.09.052}}
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[5] J. Nielsen, A. Tokuhiro, R. Hiromoto, and L. Tu. Branch-and-bound algorithm applied to uncertainty quantification of a boiling water reactor station blackout. Nuclear Engineering and Design, 295:283--304, December 2015. http://dx.doi.org/10.1016/j.nucengdes.2015.07.029.
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  title = {Branch-and-bound algorithm applied to uncertainty quantification of a boiling water reactor station blackout},
  journal = {Nuclear Engineering and Design},
  month = dec,
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  volume = 295,
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  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2015.07.029}}
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[6] K. E. Barrett, K. D. Ellis, C. R. Glass, G. A. Roth, M. P. Teague, and J. Johns. Critical processes and parameters in the development of accident tolerant fuels drop-in capsule irradiation tests. Nuclear Engineering and Design, 294:38--51, December 2015. http://dx.doi.org/10.1016/j.nucengdes.2015.07.074.
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  title = {Critical processes and parameters in the development of accident tolerant fuels drop-in capsule irradiation tests},
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  month = dec,
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  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2015.07.074}}
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[7] K. A. Gamble, A. F. Williams, P. K. Chan, and D. Wowk. A feasibility study on the use of the MOOSE computational framework to simulate three-dimensional deformation of CANDU reactor fuel elements. Nuclear Engineering and Design, 293:385--394, November 2015. http://dx.doi.org/10.1016/j.nucengdes.2015.07.028.
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  title = {{A feasibility study on the use of the MOOSE computational framework to simulate three-dimensional deformation of CANDU reactor fuel elements}},
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  month = nov,
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  volume = 293,
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  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2015.07.028}}
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[8] X. Wu, T. Kozlowski, and J. D. Hales. Neutronics and fuel performance evaluation of accident tolerant FeCrAl cladding under normal operation conditions. Annals of Nuclear Energy, 85:763--775, November 2015. http://dx.doi.org/10.1016/j.anucene.2015.06.032.
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  title = {{Neutronics and fuel performance evaluation of accident tolerant FeCrAl cladding under normal operation conditions}},
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  volume = 85,
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  note = {\url{http://dx.doi.org/10.1016/j.anucene.2015.06.032}}
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[9] X. Zhao, R. Conley, N. Ray, V. S. Mahadevan, and X. Jiao. Conformal and non-conformal adaptive mesh refinement with hierarchical array-based half-facet data structures. In 24th International Meshing Roundtable (IMR24), Austin, Texas, October 12--14, 2015. Sandia National Laboratories. Paper 6A.3, http://tinyurl.com/nllr3ph.
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[10] H. Chang. A stabilization of libMesh based finite element method in two-dimensional fluid simulation of capacitively coupled plasma. In 68th Annual Gaseous Electronics Conference/9th International Conference on Reactive Plasmas/33rd Symposium on Plasma Processing, Volume 60, Number 9, Honolulu, Hawaii, October 12--16, 2015. Abstract GT1.00093, http://meetings.aps.org/Meeting/GEC15/Session/GT1.93.
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  author = {H.~Chang},
  title = {{A stabilization of libMesh based finite element method in two-dimensional fluid simulation of capacitively coupled plasma}},
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[72] J. C. Joe, R. B. Shirley, D. Mandelli, R. L. Boring, and C. L. Smith. The development of dynamic human reliability analysis simulations for inclusion in risk informed safety margin characterization frameworks. Procedia Manufacturing, Special Issue: 6th International Conference on Applied Human Factors and Ergonomics (AHFE), July 28--30, 3:1305--1311, 2015. http://dx.doi.org/10.1016/j.promfg.2015.07.278.
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[73] M. Schmidt, A. Ismail, and R. Sauer. A continuum mechanical surrogate model for atomic beam structures. International Journal for Multiscale Computational Engineering, 13(5):413--442, 2015. http://dx.doi.org/10.1615/IntJMultCompEng.2015013568.
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  title = {A continuum mechanical surrogate model for atomic beam structures},
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[74] M. R. Tonks, Y. Zhang, A. Butterfield, and X.-M. Bai. Development of a grain boundary pinning model that considers particle size distribution using the phase field method. Modelling and Simulation in Materials Science and Engineering, 23(4):045009 (16 pages), 2015. http://dx.doi.org/10.1088/0965-0393/23/4/045009.
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[75] M. P. Lüthi, C. Ryser, L. C. Andrews, G. A. Catania, M. Funk, R. L. Hawley, M. J. Hoffman, and T. A. Neumann. Heat sources within the Greenland ice sheet: dissipation, temperate paleo-firn and cryo-hydrologic warming. The Cryosphere, 9:245--253, 2015. http://dx.doi.org/10.5194/tc-9-245-2015.
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[76] K. Smetana. A new certification framework for the port reduced static condensation reduced basis element method. Computer Methods in Applied Mechanics and Engineering, 283:352--383, January 2015. http://dx.doi.org/10.1016/j.cma.2014.09.020.
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[77] G. Pastore, L. P. Swiler, J. D. Hales, S. R. Novascone, D. M. Perez, B. W. Spencer, L. Luzzi, P. Van Uffelen, and R. L. Williamson. Uncertainty and sensitivity analysis of fission gas behavior in engineering-scale fuel modeling. Journal of Nuclear Materials, 456:398--408, January 2015. http://dx.doi.org/10.1016/j.jnucmat.2014.09.077.
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2014

[1] I. Kalashnikova, M. F. Barone, S. Arunajatesan, and B. G. van Bloemen Waanders. Construction of energy-stable projection-based reduced order models. Applied Mathematics and Computation, 249:569--596, December 2015. http://dx.doi.org/10.1016/j.amc.2014.10.073.
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  title = {Construction of energy-stable projection-based reduced order models},
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[2] H. Zhang, H. Zhao, L. Zou, D. Andrš, R. A. Berry, and R. C. Martineau. RELAP-7 user's guide. Technical Report INL/EXT-14-33977, Idaho National Laboratory, December 2014. http://tinyurl.com/nw5ecrg.
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  author = {H.~Zhang and H.~Zhao and L.~Zou and D.~Andr\v{s} and R.~A.~Berry and R.~C.~Martineau},
  title = {{RELAP-7 user's guide}},
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[3] M. C. Teague, B. S. Fromm, M. R. Tonks, and D. P. Field. Using coupled mesoscale experiments and simulations to investigate high burn-up oxide fuel thermal conductivity. Journal of the Minerals, Metals, and Materials Society (JOM), 66(12):2569--2577, December 2014. http://dx.doi.org/10.1007/s11837-014-1160-3.
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  author = {M.~C.~Teague and B.~S.~Fromm and M.~R.~Tonks and D.~P.~Field},
  title = {Using coupled mesoscale experiments and simulations to investigate high burn-up oxide fuel thermal conductivity},
  journal = {Journal of the Minerals, Metals, and Materials Society (JOM)},
  month = dec,
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  note = {\url{http://dx.doi.org/10.1007/s11837-014-1160-3}}
}
[4] V. V. Garg, S. Prudhomme, K. G. van der Zee, and G. F. Carey. Adjoint-consistent formulations of slip models for coupled electroosmotic flow systems. Advanced Modeling and Simulation in Engineering Sciences, 1(1):15 (29 pages), December 2014. http://dx.doi.org/10.1186/s40323-014-0015-3.
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  author = {V.~V.~Garg and S.~Prudhomme and K.~G.~van der Zee and G.~F.~Carey},
  title = {Adjoint-consistent formulations of slip models for coupled electroosmotic flow systems},
  journal = {Advanced Modeling and Simulation in Engineering Sciences},
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  volume = 1,
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  note = {\url{http://dx.doi.org/10.1186/s40323-014-0015-3}}
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[5] D. R. de Bruycker, J. J. Camata, and A. L. G. A. Coutinho. Parallel preconditioning for finite element solution of level set problems: A performance study. In E. Parente, editor, Proceedings of the XXXV Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE 2014), Fortaleza, Ceará, Brazil, November 23--26, 2014. http://www.cilamce2014.com.br/FinalProgram.PDF.
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  title = {{Parallel preconditioning for finite element solution of level set problems: A performance study}},
  booktitle = {{Proceedings of the XXXV Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE 2014)}},
  address = {Fortaleza, Cear\'{a}, Brazil},
  editor = {E.~Parente},
  month = nov # {~23--26,},
  year = 2014,
  note = {\url{http://www.cilamce2014.com.br/FinalProgram.PDF}}
}
[6] A. L. Rossa, D. F. M. Vasconcelos, and A. L. G. A. Coutinho. Parallel adaptive simulation of immiscible incompressible fluid flows by a residual-based phase field model. In E. Parente, editor, Proceedings of the XXXV Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE 2014), Fortaleza, Ceará, Brazil, November 23--26, 2014. http://www.cilamce2014.com.br/FinalProgram.PDF.
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  author = {A.~L.~Rossa and D.~F.~M.~Vasconcelos and A.~L.~G.~A.~Coutinho},
  title = {Parallel adaptive simulation of immiscible incompressible fluid flows by a residual-based phase field model},
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[7] F. N. Gleicher, M. Rose, and T. Downar. Redwing: A MOOSE application for coupling MPACT and BISON. Technical Report INL/CON-14-32800, Idaho National Laboratory, November 2014. http://www.osti.gov/scitech/biblio/1173105.
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  author = {F.~N.~Gleicher and M.~Rose and T.~Downar},
  title = {{Redwing: A MOOSE application for coupling MPACT and BISON}},
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[8] Y. Shi and X.-P. Wang. Modeling and simulation of dynamics of three-component flows on solid surface. Japan Journal of Industrial and Applied Mathematics, 31(3):611--631, November 2014. http://dx.doi.org/10.1007/s13160-014-0151-7.
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[9] L. Berger, D. Kay, K. Burrowes, V. Grau, S. Tavener, and R. Bordas. A poroelastic model of the lung. ArXiv e-print, November 2014. http://arxiv.org/abs/1411.1491.
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[10] H. Gao, H. Wang, C. Berry, X. Luo, and B. E. Griffith. Quasi-static image-based immersed boundary-finite element model of left ventricle under diastolic loading. International Journal for Numerical Methods in Biomedical Engineering, 30(11):1199--1222, November 2014. http://dx.doi.org/10.1002/cnm.2652.
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[11] A. Corsini, F. Rispoli, A. G. Sheard, K. Takizawa, T. E. Tezduyar, and P. Venturini. A variational multiscale method for particle-cloud tracking in turbomachinery flows. Computational Mechanics, 54(5):1191--1202, November 2014. http://dx.doi.org/10.1007/s00466-014-1050-0.
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[12] E. E. Prudencio, P. T. Bauman, S. V. Williams, D. Faghihi, K. Ravi-Chandar, and J. T. Oden. Real-time inference of stochastic damage in composite materials. Composites Part B: Engineering, 67:209--219, November 2014. http://dx.doi.org/10.1016/j.compositesb.2014.07.004.
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[13] C. Ryser, M. P. Lüthi, L. C. Andrews, G. A. Catania, M. Funk, R. Hawley, M. Hoffman, and T. A. Neumann. Caterpillar-like ice motion in the ablation zone of the Greenland ice sheet. Journal of Geophysical Research: Earth Surface, 119(10):2258--2271, October 2014. http://dx.doi.org/10.1002/2013JF003067.
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  title = {{Caterpillar-like ice motion in the ablation zone of the Greenland ice sheet}},
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[14] W. Liu, R. Montgomery, C. Stanek, and C. Tomé. Demonstration of atomistically-informed multiscale Zr alloy deformation models in Peregrine for normal and accident scenarios. Technical Report CASL-U-2014-201-000, LA-UR-14-27758, ANATECH Corporation, Pacific Northwest National Laboratory, Los Alamos National Laboratory, October 2014. http://tinyurl.com/orn7ldm.
@techreport{Liu_2014,
  author = {W.~Liu and R.~Montgomery and C.~Stanek and C.~Tom\'{e}},
  title = {{Demonstration of atomistically-informed multiscale Zr alloy deformation models in Peregrine for normal and accident scenarios}},
  institution = {ANATECH Corporation, Pacific Northwest National Laboratory, Los Alamos National Laboratory},
  day = 6,
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  year = 2014,
  number = {CASL-U-2014-201-000, LA-UR-14-27758},
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[15] Z. Zhang, E. Bader, and K. Veroy. A duality approach to error estimation for variational inequalities. ArXiv e-print, October 2014. http://arxiv.org/abs/1410.2095.
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  author = {Z.~Zhang and E.~Bader and K.~Veroy},
  title = {A duality approach to error estimation for variational inequalities},
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[16] H. Huang, B. Spencer, and J. Hales. Discrete element method for simulation of early-life thermal fracturing behavior in ceramic nuclear fuel pellets. Nuclear Engineering and Design, 278:515--528, October 2014. http://dx.doi.org/10.1016/j.nucengdes.2014.05.049.
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  journal = {Nuclear Engineering and Design},
  month = oct,
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  volume = 278,
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[17] Y. Wang and F. N. Gleicher. Revisit boundary conditions for the self-adjoint angular flux formulation. In K. Suyama, T. Sugawara, K. Tada, G. Chiba, and A. Yamamoto, editors, Proceedings of the International Conference on Physics of Reactors (PHYSOR 2014), Kyoto, Japan, September 28--October 3, 2014. http://dx.doi.org/10.11484/jaea-conf-2014-003.
@inproceedings{Wang_2014,
  author = {Y.~Wang and F.~N.~Gleicher},
  title = {{Revisit boundary conditions for the self-adjoint angular flux formulation}},
  booktitle = {{Proceedings of the International Conference on Physics of Reactors (PHYSOR 2014)}},
  address = {Kyoto, Japan},
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[18] A. Alfonsi, C. Rabiti, D. Mandelli, J. Cogliati, R. Kinoshita, and A. Naviglio. RAVEN and dynamic probabilistic risk assessment: Software overview. In European Safety and Reliability Conference (ESREL XXIV), Wroclaw, Poland, September 14--18, 2014. http://www.diegomandelli.com/papers/2014/ESREL/ESREL-FULL_PAPER.pdf.
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  author = {A.~Alfonsi and C.~Rabiti and D.~Mandelli and J.~Cogliati and R.~Kinoshita and A.~Naviglio},
  title = {{RAVEN and dynamic probabilistic risk assessment: Software overview}},
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[19] G. Pastore, D. Pizzocri, J. D. Hales, S. R. Novascone, D. M. Perez, B. W. Spencer, R. L. Williamson, P. Van Uffelen, and L. Luzzi. Modelling of transient fission gas behaviour in oxide fuel and application to the BISON code. In 38th Enlarged Halden Programme Group (EHPG) Meeting, Røros, Norway, September 7--12, 2014. http://tinyurl.com/j5348ws.
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  title = {{Modelling of transient fission gas behaviour in oxide fuel and application to the BISON code}},
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[20] A.-M. Toader and C. Barbarosie. Optimization of bodies with locally periodic microstructure by varying the periodicity pattern. Networks and Heterogeneous Media, 9(3):433--451, September 2014. http://dx.doi.org/10.3934/nhm.2014.9.433.
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  author = {A.-M.~Toader and C.~Barbarosie},
  title = {Optimization of bodies with locally periodic microstructure by varying the periodicity pattern},
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[21] S. Simunovic, T. M. Besmann, and S. L. Voit. Benchmark problem for calculating oxygen potential in high burnup LWR fuel using the Thermochimica module in MOOSE/BISON. Technical Report ORNL/TM-2014/529, Oak Ridge National Laboratory, September 2014. http://dx.doi.org/10.2172/1163165.
@techreport{Simunovic_2014b,
  author = {S.~Simunovic and T.~M.~Besmann and S.~L.~Voit},
  title = {{Benchmark problem for calculating oxygen potential in high burnup LWR fuel using the Thermochimica module in MOOSE/BISON}},
  institution = {Oak Ridge National Laboratory},
  day = 30,
  month = sep,
  year = 2014,
  number = {ORNL/TM-2014/529},
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[22] R. C. Schmidt, L. P. Swiler, D. M. Perez, and R. L. Williamson. Sensitivity analysis of the gap heat transfer model in BISON. Technical Report SAND2014-18550, Sandia National Laboratories, September 2014. http://prod.sandia.gov/techlib/access-control.cgi/2014/1418550.pdf.
@techreport{Schmidt_2014b,
  author = {R.~C.~Schmidt and L.~P.~Swiler and D.~M.~Perez and R.~L.~Williamson},
  title = {{Sensitivity analysis of the gap heat transfer model in BISON}},
  institution = {Sandia National Laboratories},
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  number = {SAND2014-18550},
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[23] C. Unal and J. D. Galloway. Final report on accident tolerant fuel performance analysis of APMT-steel clad/UO2 fuel and APMT-steel clad/UN-U3Si5 fuel concepts. Technical Report LA-UR-14-27175, Los Alamos National Laboratory, September 2014. http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-14-27175.
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  author = {C.~Unal and J.~D.~Galloway},
  title = {{Final report on accident tolerant fuel performance analysis of APMT-steel clad/UO$_2$ fuel and APMT-steel clad/UN-U$_3$Si$_5$ fuel concepts}},
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  year = 2014,
  volume = 60,
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[55] S. Vallaghé and A. T. Patera. The static condensation reduced basis element method for a mixed-mean conjugate heat exchanger model. SIAM Journal on Scientific Computing, 36(3):B294--B320, 2014. http://dx.doi.org/10.1137/120887709.
@article{Vallaghe_2014,
  author = {S.~Vallagh\'{e} and A.~T.~Patera},
  title = {The static condensation reduced basis element method for a mixed-mean conjugate heat exchanger model},
  journal = {SIAM Journal on Scientific Computing},
  year = 2014,
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[56] M. Ellis, J. Ortensi, Y. Wang, K. Smith, and R. C. Martineau. Initial RattleSnake calculations of the hot zero power BEAVRS. Technical Report INL/EXT-13-30903, Idaho National Laboratory, January 2014. http://www.inl.gov/technicalpublications/Documents/5974389.pdf.
@techreport{Ellis_2014,
  author = {M.~Ellis and J.~Ortensi and Y.~Wang and K.~Smith and R.~C.~Martineau},
  title = {{Initial RattleSnake calculations of the hot zero power BEAVRS}},
  institution = {Idaho National Laboratory},
  month = jan,
  year = 2014,
  number = {INL/EXT-13-30903},
  note = {\url{http://www.inl.gov/technicalpublications/Documents/5974389.pdf}}
}
[57] M. G. Schmidt, R. A. Sauer, and A. E. Ismail. Multiscale treatment of mechanical contact problems involving thin polymeric layers. Modelling and Simulation in Materials Science and Engineering, 22:045012 (30 pages), 2014. http://dx.doi.org/10.1088/0965-0393/22/4/045012.
@article{Schmidt_2014,
  author = {M.~G.~Schmidt and R.~A.~Sauer and A.~E.~Ismail},
  title = {Multiscale treatment of mechanical contact problems involving thin polymeric layers},
  journal = {Modelling and Simulation in Materials Science and Engineering},
  year = 2014,
  volume = 22,
  pages = {045012 (30 pages)},
  note = {\url{http://dx.doi.org/10.1088/0965-0393/22/4/045012}}
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[58] V. Vavourakis, A. Kazakidi, D. P. Tsakiris, and J. A. Ekaterinaris. A nonlinear dynamic finite element approach for simulating muscular hydrostats. Computer Methods in Biomechanics and Biomedical Engineering, 17(8):917--931, 2014. http://dx.doi.org/10.1080/10255842.2012.723702.
@article{Vavourakis_2014,
  author = {V.~Vavourakis and A.~Kazakidi and D.~P.~Tsakiris and J.~A.~Ekaterinaris},
  title = {A nonlinear dynamic finite element approach for simulating muscular hydrostats},
  journal = {Computer Methods in Biomechanics and Biomedical Engineering},
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[59] M. P. Short, D. Gaston, C. R. Stanek, and S. Yip. A perspective on coupled multiscale simulation and validation in nuclear materials. Materials Research Society Bulletin, 39(1):71--77, January 2014. http://dx.doi.org/10.1557/mrs.2013.315.
@article{Short_2014,
  author = {M.~P.~Short and D.~Gaston and C.~R.~Stanek and S.~Yip},
  title = {A perspective on coupled multiscale simulation and validation in nuclear materials},
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[60] J. L. Eftang and A. T. Patera. A port-reduced static condensation reduced basis element method for large component-synthesized structures: approximation and a posteriori error estimation. Advanced Modeling and Simulation in Engineering Sciences, 1(3), January 2014. http://dx.doi.org/10.1186/2213-7467-1-3.
@article{Eftang_2014,
  author = {J.~L.~Eftang and A.~T.~Patera},
  title = {A port-reduced static condensation reduced basis element method for large component-synthesized structures: approximation and \emph{a posteriori} error estimation},
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[61] I. D. Neveln, R. Bale, A. P. S. Bhalla, O. M. Curet, N. A. Patankar, and M. A. Maciver. Undulating fins produce off-axis thrust and flow structures. The Journal of Experimental Biology, 217(2):201--213, 2014. http://dx.doi.org/10.1242/jeb.091520.
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  title = {Undulating fins produce off-axis thrust and flow structures},
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[62] M. R. Tonks, Y. Zhang, X. Bai, and P. C. Millett. Demonstrating the temperature gradient impact on grain growth in UO2 using the phase field method. Materials Research Letters, 2(1):23--28, 2014. http://dx.doi.org/10.1080/21663831.2013.849300.
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  author = {M.~R.~Tonks and Y.~Zhang and X.~Bai and P.~C.~Millett},
  title = {{Demonstrating the temperature gradient impact on grain growth in UO$_2$ using the phase field method}},
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[63] M. Teague, M. Tonks, S. Novascone, and S. Hayes. Microstructural modeling of thermal conductivity of high burn-up mixed oxide fuel. Journal of Nuclear Materials, 444(1--3):161--169, 2014. http://dx.doi.org/10.1016/j.jnucmat.2013.09.035.
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  author = {M.~Teague and M.~Tonks and S.~Novascone and S.~Hayes},
  title = {Microstructural modeling of thermal conductivity of high burn-up mixed oxide fuel},
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}

2013

[1] X. S. Ma, H. Gao, N. Qi, C. Berry, B. E. Griffith, and X. Y. Luo. Image-based immersed boundary/finite element model of the human mitral valve. In P. Nithiarasu, R. Löhner, and K. M. Liew, editors, Proceedings of the Third International Conference on Computational & Mathematical Biomedical Engineering (CMBE13), Kowloon Tong, Hong Kong, December 16--18, 2013. http://tinyurl.com/zs558my.
@inproceedings{Ma_2013,
  author = {X.~S.~Ma and H.~Gao and N.~Qi and C.~Berry and B.~E.~Griffith and X.~Y.~Luo},
  title = {Image-based immersed boundary/finite element model of the human mitral valve},
  booktitle = {{Proceedings of the Third International Conference on Computational \& Mathematical Biomedical Engineering (CMBE13)}},
  address = {Kowloon Tong, Hong Kong},
  editor = {P.~Nithiarasu and R.~L\"{o}hner and K.~M.~Liew},
  month = dec # {~16--18,},
  year = 2013,
  note = {\url{http://tinyurl.com/zs558my}}
}
[2] V. Flamini, A. DeAnda, and B. E. Griffith. Simulating the effects of intersubject variability in aortic root compliance by the immersed boundary method. In P. Nithiarasu, R. Löhner, and K. M. Liew, editors, Proceedings of the Third International Conference on Computational & Mathematical Biomedical Engineering (CMBE13), Kowloon Tong, Hong Kong, December 16--18, 2013. http://tinyurl.com/zs558my.
@inproceedings{Flamini_2013,
  author = {V.~Flamini and A.~DeAnda and B.~E.~Griffith},
  title = {Simulating the effects of intersubject variability in aortic root compliance by the immersed boundary method},
  booktitle = {{Proceedings of the Third International Conference on Computational \& Mathematical Biomedical Engineering (CMBE13)}},
  address = {Kowloon Tong, Hong Kong},
  editor = {P.~Nithiarasu and R.~L\"{o}hner and K.~M.~Liew},
  month = dec # {~16--18,},
  year = 2013,
  note = {\url{http://tinyurl.com/zs558my}}
}
[3] B. E. Griffith, V. Flamini, A. DeAnda, and L. Scotten. Simulating the dynamics of an aortic valve prosthesis in a pulse duplicator: Numerical methods and initial experience. Journal of Medical Devices, 7(4):040912, December 2013. http://dx.doi.org/10.1115/1.4025768.
@article{Griffith_2013,
  author = {B.~E.~Griffith and V.~Flamini and A.~DeAnda and L.~Scotten},
  title = {{Simulating the dynamics of an aortic valve prosthesis in a pulse duplicator: Numerical methods and initial experience}},
  journal = {Journal of Medical Devices},
  month = dec,
  year = 2013,
  volume = 7,
  number = 4,
  pages = {040912},
  note = {\url{http://dx.doi.org/10.1115/1.4025768}}
}
[4] P. Rong, O. von Estorff, L. Nagler, and M. Schanz. A finite element plate formulation for the acoustical investigation of thin air layers. Journal of Computational Acoustics, 21(4):1350014 (14 pages), December 2013. http://dx.doi.org/10.1142/S0218396X13500148.
@article{Rong_2013,
  author = {P.~Rong and O.~von Estorff and L.~Nagler and M.~Schanz},
  title = {A finite element plate formulation for the acoustical investigation of thin air layers},
  journal = {Journal of Computational Acoustics},
  year = 2013,
  volume = 21,
  number = 4,
  month = dec,
  pages = {1350014 (14 pages)},
  note = {\url{http://dx.doi.org/10.1142/S0218396X13500148}}
}
[5] D. Fuentes, J. T. Oden, K. R. Diller, J. Yung, Y. Feng, J. D. Hazle, A. Shetty, and R. J. Stafford. Computational and MR-guided patient-specific laser induced thermal therapy of cancer. Technical Report 13-33, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, December 2013. http://tinyurl.com/zeokjcc.
@techreport{Fuentes_2013b,
  author = {D.~Fuentes and J.~T.~Oden and K.~R.~Diller and J.~Yung and Y.~Feng and J.~D.~Hazle and A.~Shetty and R.~J.~Stafford},
  title = {{Computational and MR-guided patient-specific laser induced thermal therapy of cancer}},
  institution = {Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin},
  year = 2013,
  month = dec,
  number = {13-33},
  note = {\url{http://tinyurl.com/zeokjcc}}
}
[6] A. L. Rossa and A. L. G. A. Coutinho. Parallel adaptive simulation of gravity currents on the lock-exchange problem. Computers & Fluids, 88:782--794, December 2013. http://dx.doi.org/10.1016/j.compfluid.2013.06.008.
@article{Rossa_2013,
  author = {A.~L.~Rossa and A.~L.~G.~A.~Coutinho},
  title = {Parallel adaptive simulation of gravity currents on the lock-exchange problem},
  journal = {Computers \& Fluids},
  year = 2013,
  month = dec,
  volume = 88,
  pages = {782--794},
  note = {\url{http://dx.doi.org/10.1016/j.compfluid.2013.06.008}}
}
[7] P. Rong, M. Abele, and O. von Estorff. Comparison of different methods for simulating acoustic diffuse field excitations. Acta Acustica united with Acustica, 99(6):931--939, December 2013. http://dx.doi.org/10.3813/AAA.918672.
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  author = {P.~Rong and M.~Abele and O.~von Estorff},
  title = {Comparison of different methods for simulating acoustic diffuse field excitations},
  journal = {Acta Acustica united with Acustica},
  year = 2013,
  volume = 99,
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  month = dec,
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  note = {\url{http://dx.doi.org/10.3813/AAA.918672}}
}
[8] L. Botti, K. Canneyt, R. Kaminsky, T. Claessens, R. N. Planken, P. Verdonck, A. Remuzzi, and L. Antiga. Numerical evaluation and experimental validation of pressure drops across a patient-specific model of vascular access for hemodialysis. Cardiovascular Engineering and Technology, 4(4):485--499, December 2013. http://dx.doi.org/10.1007/s13239-013-0162-6.
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  title = {Numerical evaluation and experimental validation of pressure drops across a patient-specific model of vascular access for hemodialysis},
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  year = 2013,
  month = dec,
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  note = {\url{http://dx.doi.org/10.1007/s13239-013-0162-6}}
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[9] V. Vavourakis, D. Loukidis, D. C. Charmpis, and P. Papanastasiou. A robust finite element approach for large deformation elastoplastic plane-strain problems. Finite Elements in Analysis and Design, 77:1--15, December 2013. http://dx.doi.org/10.1016/j.finel.2013.08.003.
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  author = {V.~Vavourakis and D.~Loukidis and D.~C.~Charmpis and P.~Papanastasiou},
  title = {A robust finite element approach for large deformation elastoplastic plane-strain problems},
  journal = {Finite Elements in Analysis and Design},
  year = 2013,
  volume = 77,
  month = dec,
  pages = {1--15},
  note = {\url{http://dx.doi.org/10.1016/j.finel.2013.08.003}}
}
[10] D. M. Perez, R. L. Williamson, S. R. Novascone, G. Pastore, J. D. Hales, and B. W. Spencer. Assessment of BISON: A nuclear fuel performance analysis code. Technical Report INL/MIS-13-30314, Idaho National Laboratory, November 2013. http://tinyurl.com/zykc9ah.
@techreport{Perez_2013b,
  author = {D.~M.~Perez and R.~L.~Williamson and S.~R.~Novascone and G.~Pastore and J.~D.~Hales and B.~W.~Spencer},
  title = {{Assessment of BISON: A nuclear fuel performance analysis code}},
  institution = {Idaho National Laboratory},
  month = nov,
  year = 2013,
  number = {INL/MIS-13-30314},
  note = {\url{http://tinyurl.com/zykc9ah}}
}
[11] D. R. Gaston, J. W. Peterson, C. J. Permann, D. Andrs, A. E. Slaughter, and J. M. Miller. Continuous integration for concurrent computational framework and application development. In First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE), In Conjunction with SC13, Denver, Colorado, November 2013. http://dx.doi.org/10.6084/m9.figshare.790755.
@inproceedings{Gaston_2013b,
  author = {D.~R.~Gaston and J.~W.~Peterson and C.~J.~Permann and D.~Andrs and A.~E.~Slaughter and J.~M.~Miller},
  title = {Continuous integration for concurrent computational framework and application development},
  booktitle = {{First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE), In Conjunction with SC13}},
  address = {Denver, Colorado},
  month = nov,
  year = 2013,
  note = {\url{http://dx.doi.org/10.6084/m9.figshare.790755}}
}
[12] R. P. Widmer Soyka, A. López, C. Persson, L. Cristofolini, and S. J. Ferguson. Numerical description and experimental validation of a rheology model for non-Newtonian fluid flow in cancellous bone. Journal of the Mechanical Behavior of Biomedical Materials, 27:43--53, November 2013. http://dx.doi.org/10.1016/j.jmbbm.2013.06.007.
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  author = {R.~P.~Widmer Soyka and A.~L\'{o}pez and C.~Persson and L.~Cristofolini and S.~J.~Ferguson},
  title = {{Numerical description and experimental validation of a rheology model for non-Newtonian fluid flow in cancellous bone}},
  journal = {Journal of the Mechanical Behavior of Biomedical Materials},
  year = 2013,
  volume = 27,
  month = nov,
  pages = {43--53},
  note = {\url{http://dx.doi.org/10.1016/j.jmbbm.2013.06.007}}
}
[13] J. D. Hales, R. L. Williamson, S. R. Novascone, D. M. Perez, B. W. Spencer, and G. Pastore. Multidimensional multiphysics simulation of TRISO particle fuel. Journal of Nuclear Materials, 443(1--3):531--543, November 2013. http://dx.doi.org/10.1016/j.jnucmat.2013.07.070.
@article{Hales_2013b,
  author = {J.~D.~Hales and R.~L.~Williamson and S.~R.~Novascone and D.~M.~Perez and B.~W.~Spencer and G.~Pastore},
  title = {{Multidimensional multiphysics simulation of TRISO particle fuel}},
  journal = {Journal of Nuclear Materials},
  year = 2013,
  volume = 443,
  number = {1--3},
  month = nov,
  pages = {531--543},
  note = {\url{http://dx.doi.org/10.1016/j.jnucmat.2013.07.070}}
}
[14] A. Günther, H. Lamecker, and M. Weiser. Flexible shape matching with finite element based LDDMM. International Journal of Computer Vision, 105(2):128--143, November 2013. http://dx.doi.org/10.1007/s11263-012-0599-3.
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  author = {A.~G\"{u}nther and H.~Lamecker and M.~Weiser},
  title = {{Flexible shape matching with finite element based LDDMM}},
  journal = {International Journal of Computer Vision},
  volume = 105,
  number = 2,
  pages = {128--143},
  month = nov,
  year = 2013,
  note = {\url{http://dx.doi.org/10.1007/s11263-012-0599-3}}
}
[15] R. L. Williamson, J. D. Hales, S. R. Novascone, G. Pastore, D. M. Perez, B. W. Spencer, and R. C. Martineau. Overview of the BISON multidimensional fuel performance code. In Proceedings of the IAEA technical meeting on modelling of water-cooled fuel including design-basis and severe accidents, pages 64--83, Chengdu, China, October 28--November 1, 2013. IAEA-TECDOC-CD-1775, http://tinyurl.com/oszna8m.
@inproceedings{Williamson_2013,
  author = {R.~L.~Williamson and J.~D.~Hales and S.~R.~Novascone and G.~Pastore and D.~M.~Perez and B.~W.~Spencer and R.~C.~Martineau},
  title = {{Overview of the BISON multidimensional fuel performance code}},
  booktitle = {{Proceedings of the IAEA technical meeting on modelling of water-cooled fuel including design-basis and severe accidents}},
  address = {Chengdu, China},
  pages = {64--83},
  month = oct # {~28--} # nov # {~1,},
  year = 2013,
  note = {IAEA-TECDOC-CD-1775, \url{http://tinyurl.com/oszna8m}}
}
[16] R. Montgomery, C. Stanek, W. Liu, and B. Kendrick. US DOE CASL Program fuel performance modeling for steady state and transient analysis of LWR fuel. In Proceedings of the IAEA technical meeting on modelling of water-cooled fuel including design-basis and severe accidents, pages 84--111, Chengdu, China, October 28--November 1, 2013. IAEA-TECDOC-CD-1775, http://tinyurl.com/jq3aech.
@inproceedings{Montgomery_2013,
  author = {R.~Montgomery and C.~Stanek and W.~Liu and B.~Kendrick},
  title = {{US DOE CASL Program fuel performance modeling for steady state and transient analysis of LWR fuel}},
  booktitle = {{Proceedings of the IAEA technical meeting on modelling of water-cooled fuel including design-basis and severe accidents}},
  address = {Chengdu, China},
  pages = {84--111},
  month = oct # {~28--} # nov # {~1,},
  year = 2013,
  note = {IAEA-TECDOC-CD-1775, \url{http://tinyurl.com/jq3aech}}
}
[17] J. D. Hales, S. R. Novascone, G. Pastore, D. M. Perez, B. W. Spencer, and R. L. Williamson. BISON theory manual: The equations behind nuclear fuel analysis. Technical Report INL/EXT-13-29930, Idaho National Laboratory, October 2013. https://doi.org/10.2172/1107264.
@techreport{Hales_2013c,
  author = {J.~D.~Hales and S.~R.~Novascone and G.~Pastore and D.~M.~Perez and B.~W.~Spencer and R.~L.~Williamson},
  title = {{BISON theory manual: The equations behind nuclear fuel analysis}},
  institution = {Idaho National Laboratory},
  month = oct,
  year = 2013,
  number = {INL/EXT-13-29930},
  note = {\url{https://doi.org/10.2172/1107264}}
}
[18] J. Biermann and O. von Estorff. Higher order finite and infinite acoustical elements based on ultraspherical polynomials. Acta Acustica united with Acustica, 99(5):759--769, September/October 2013. http://dx.doi.org/10.3813/AAA.918654.
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  author = {J.~Biermann and O.~von Estorff},
  title = {Higher order finite and infinite acoustical elements based on ultraspherical polynomials},
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  volume = 99,
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[19] Y. Li, S. Hu, and X. Sun. Report on the implementation of the homogeneous nucleation scheme in MARMOT-based phase field simulations. Technical Report PNNL-22829, Pacific Northwest National Laboratory, September 2013. http://tinyurl.com/pesukh3.
@techreport{Li_2013,
  author = {Y.~Li and S.~Hu and X.~Sun},
  title = {{Report on the implementation of the homogeneous nucleation scheme in MARMOT-based phase field simulations}},
  institution = {Pacific Northwest National Laboratory},
  month = sep,
  year = 2013,
  number = {PNNL-22829},
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[20] L. P. Swiler, D. Mandelli, C. Rabiti, and A. Alfonsi. DAKOTA reliability methods applied to RAVEN/RELAP-7. Technical Report SAND2013-8439, Sandia National Laboratory, September 2013. http://tinyurl.com/jrgfvrg.
@techreport{Swiler_2013c,
  author = {L.~P.~Swiler and D.~Mandelli and C.~Rabiti and A.~Alfonsi},
  title = {{DAKOTA reliability methods applied to RAVEN/RELAP-7}},
  institution = {Sandia National Laboratory},
  month = sep,
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  number = {SAND2013-8439},
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[21] P. Medvedev. Summary report on the fuel performance modeling of the AFC-2A, 2B irradiation experiments. Technical Report INL/EXT-13-30006, Idaho National Laboratory, September 2013. https://doi.org/10.2172/1111012.
@techreport{Medvedev_2013,
  author = {P.~Medvedev},
  title = {{Summary report on the fuel performance modeling of the AFC-2A, 2B irradiation experiments}},
  institution = {Idaho National Laboratory},
  month = sep,
  year = 2013,
  number = {INL/EXT-13-30006},
  note = {\url{https://doi.org/10.2172/1111012}}
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[22] R. Hu, J. W. Thomas, E. Munkhzul, T. H. Fanning, H. Zhang, and R. Martineau. Development of SFR primary system simulation capability for advanced system codes. Technical Report ANL/NE-13/11, Argonne National Laboratory, September 2013. http://www.ipd.anl.gov/anlpubs/2014/01/77535.pdf, http://dx.doi.org/10.2172/1121040.
@techreport{Hu_2013b,
  author = {R.~Hu and J.~W.~Thomas and E.~Munkhzul and T.~H.~Fanning and H.~Zhang and R.~Martineau},
  title = {{Development of SFR primary system simulation capability for advanced system codes}},
  institution = {Argonne National Laboratory},
  day = 30,
  month = sep,
  year = 2013,
  number = {ANL/NE-13/11},
  note = {\url{http://www.ipd.anl.gov/anlpubs/2014/01/77535.pdf}, \url{http://dx.doi.org/10.2172/1121040}}
}
[23] S. R. Novascone, B. W. Spencer, and J. D. Hales. Light water reactor sustainability program: Status report on the Grizzly code enhancements. Technical Report INL/EXT-13-30315, Idaho National Laboratory, September 2013. https://doi.org/10.2172/1115617.
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2012

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[46] J. D. Hales, S. R. Novascone, R. L. Williamson, D. R. Gaston, and M. R. Tonks. Solving nonlinear solid mechanics problems with the Jacobian-free Newton Krylov Method. Computer Modeling in Engineering & Sciences, 84(2):123--152, 2012. http://www.techscience.com/doi/10.3970/cmes.2012.084.123.html.
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2011

[1] A. Bourgeat. Modeling compressible multiphase flow and transport in saturated/unsaturated porous media: phase appearance/disappearance. In Special Semester on Multiscale Simulation & Analysis in Energy and the Environment, Linz, Austria, October 3--December 16, 2011. Johann Radon Institute for Computational and Applied Mathematics (RICAM). http://tinyurl.com/pezom3n.
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[3] A. Corsini, F. Rispoli, and E. Tuccimei. Development of air turbines for small power OWC plants. In Proceedings of the 9th European Wave and Tidal Energy Conference (EWTEC), Southampton, United Kingdom, September 5--9 2011.
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[4] A. Günther, H. Lamecker, and M. Weiser. Direct LDDMM of discrete currents with adaptive finite elements. In X. Pennec, S. Joshi, and M. Nielsen, editors, Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy -- Geometrical and Statistical Methods for Modelling Biological Shape Variability, pages 1--14, Toronto, Ontario, Canada, September 2011. http://hal.inria.fr/docs/00/62/38/15/PDF/MFCA11_1_1.pdf.
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[5] V. Vavourakis, Y. Papaharilaou, and J. A. Ekaterinaris. Coupled fluid-structure interaction hemodynamics in a zero-pressure state corrected arterial geometry. Journal of Biomechanics, 44(13):2453--2460, September 2011. http://dx.doi.org/10.1016/j.jbiomech.2011.06.024.
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[6] S. Berrone and M. Verani. A new marking strategy for the adaptive finite element approximation of optimal control constrained problems. Optimization Methods and Software, Special Issue: Advances in Shape and Topology Optimization: Theory, Numerics and New Application Areas, 26(4--5):747--775, August--October 2011. http://dx.doi.org/10.1080/10556788.2010.491866.
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[7] O. A. Sopeju, M. Burtscher, A. Rane, and J. Browne. AutoSCOPE: Automatic suggestions for code optimizations using PerfExpert. In H. R. Arabnia, editor, Proceedings of the 2011 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'11), Las Vegas, Nevada, July 18--21, 2011. http://world-comp.org/p2011/PDP4432.pdf.
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[8] R. P. Widmer and S. J. Ferguson. A comparison of computational methods to determine the permeability of vertebral trabecular bone. In Proceedings of the 23rd Congress of the International Society of Biomechanics (ISB), Brussels, Belgium, July 3--7, 2011. http://tinyurl.com/gw83ldq.
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[11] P. Bauman, J. Jagodzinski, and B. S. Kirk. Statistical calibration of thermocouple gauges used for inferring heat flux. In 42nd AIAA Thermophysics Conference, Fluid Dynamics and Co-located Conferences, Honolulu, Hawaii, June 27--30, 2011. http://dx.doi.org/10.2514/6.2011-3779.
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[12] S. W. Bova and B. S. Kirk. On the preservation of total enthalpy in SUPG methods. In 20th AIAA Computational Fluid Dynamics Conference, Honolulu, Hawaii, June 27--30, 2011. http://dx.doi.org/10.2514/6.2011-3841, Paper AIAA-2011-3841.
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  author = {S.~W.~Bova and B.~S.~Kirk},
  title = {{On the preservation of total enthalpy in SUPG methods}},
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[13] P. A. Vazquez and A. Castellanos. Stability analysis of the 3D electroconvective charged flow between parallel plates using the particle-in-cell method. In 2011 IEEE International Conference on Dielectric Liquids (ICDL), pages 1--4, Trondheim, Norway, June 26--30, 2011. http://dx.doi.org/10.1109/ICDL.2011.6015467.
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  author = {P.~A.~Vazquez and A.~Castellanos},
  booktitle = {{2011 IEEE International Conference on Dielectric Liquids (ICDL)}},
  address = {Trondheim, Norway},
  title = {{Stability analysis of the 3D electroconvective charged flow between parallel plates using the particle-in-cell method}},
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[14] D. P. Guillen, D. Gaston, and J. Tester. Multiphase flow modeling of biofuel production processes. Technical Report INL/CON-11-21680, Idaho National Laboratory, June 2011. http://tinyurl.com/gwrtgs3.
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[17] Y. Feng and D. Fuentes. Real-time predictive surgical control for cancer treatment using laser ablation. IEEE Signal Processing Magazine, 28(3):134--138, May 2011. http://dx.doi.org/10.1109/MSP.2011.940419.
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[18] M. Auf der Maur, G. Penazzi, G. Romano, F. Sacconi, A. Pecchia, and A. Di Carlo. The multiscale paradigm in electronic device simulation. IEEE Transactions on Electron Devices, 58(5):1425--1432, May 2011. http://dx.doi.org/10.1109/TED.2011.2114666.
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[21] L. Botti and D. A. Di Pietro. A pressure-correction scheme for convection-dominated incompressible flows with discontinuous velocity and continuous pressure. Journal of Computational Physics, 230(3):572--585, February 2011. http://dx.doi.org/10.1016/j.jcp.2010.10.004.
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[22] B. S. Kirk, S. W. Bova, and R. B. Bond. A streamline-upwind Petrov--Galerkin finite element scheme for non-ionized hypersonic flows in thermochemical nonequilibrium. In 49th AIAA Aerospace Sciences Meeting Including the New Horizons Forum and Aerospace Exposition, Orlando, Florida, January 4--7, 2011. http://dx.doi.org/10.2514/6.2011-134.
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  author = {A.~J.~Amar and N.~D.~Calvert and B.~S.~Kirk},
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  series = {Lecture Notes in Computational Science and Engineering},
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  title = {Interior point methods for the inverse medium problem on massively parallel architectures},
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  title = {{Reduced basis approximation and a posteriori error estimation for the parametrized unsteady Boussinesq equations}},
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  title = {{Numerical experiments on existence and non-uniqueness of solutions of the thermistor problem with Helmholtz term}},
  year = 2011,
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[28] J. L. Eftang, D. J. Knezevic, and A. T. Patera. An hp certified reduced basis method for parameterized parabolic partial differential equations. Mathematical and Computer Modelling of Dynamical Systems, Special Issue: Model order reduction of parameterized problems, 17(4):395--422, 2011. http://dx.doi.org/10.1080/13873954.2011.547670.
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  author = {J.~L.~Eftang and D.~J.~Knezevic and A.~T.~Patera},
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2010

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[9] Y. Lu, B. Zhu, H. Shen, J. C. Rasmussen, G. Wang, and E. M. Sevick-Muraca. A parallel adaptive finite element simplified spherical harmonics approximation solver for frequency domain fluorescence molecular imaging. Physics in Medicine and Biology, 55(16):4625--4645, August 2010. http://dx.doi.org/10.1088/0031-9155/55/16/002.
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[13] A. Pecchia. Transport at the nanoscale: Integration of micro-macro scales for electrothermal device simulations. Technical Report A029035, Grant No: FA8655-08-1-3017, University of Rome, “Tor Vergata”, May 2010. http://tinyurl.com/o8nbpom.
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[14] D. Fuentes, Y. Feng, A. Elliott, A. Shetty, R. J. McNichols, J. T. Oden, and R. J. Stafford. Adaptive real-time bioheat transfer models for computer driven MR-guided laser induced thermal therapy. IEEE Transactions on Biomedical Engineering, 57(5):1024--1030, May 2010. https://dx.doi.org/10.1109/TBME.2009.2037733.
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  title = {{Adaptive real-time bioheat transfer models for computer driven MR-guided laser induced thermal therapy}},
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@article{Peterson_2010,
  author = {J.~W.~Peterson and G.~F.~Carey and B.~T.~Murray},
  title = {Multi-resolution simulation of double-diffusive convection in porous media},
  journal = {International Journal of Numerical Methods for Heat \& Fluid Flow},
  volume = 20,
  number = 1,
  year = 2010,
  pages = {37--65},
  note = {\url{http://dx.doi.org/10.1108/09615531011008118}}
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[25] L. Botti, M. Piccinelli, B. Ene-Iordache, A. Remuzzi, and L. Antiga. An adaptive mesh refinement solver for large-scale simulation of biological flows. International Journal for Numerical Methods in Biomedical Engineering, 26(1):86--100, 2010. http://dx.doi.org/10.1002/cnm.1257.
@article{Botti_2010,
  author = {L.~Botti and M.~Piccinelli and B.~Ene-Iordache and A.~Remuzzi and L.~Antiga},
  title = {An adaptive mesh refinement solver for large-scale simulation of biological flows},
  journal = {International Journal for Numerical Methods in Biomedical Engineering},
  year = 2010,
  volume = 26,
  number = 1,
  pages = {86--100},
  note = {\url{http://dx.doi.org/10.1002/cnm.1257}}
}

2009

[1] P. Prouzet, M. Odunlami, E. Duquesne, and A. Boussouar. Analysis and visualization of the glass eel behavior (Anguilla anguilla) in the Adour estuary and estimate of its upstream migration speed. Aquatic Living Resources, 22(4):525--534, December 2009. http://dx.doi.org/10.1051/alr/2009041.
@article{Prouet_2009,
  author = {P.~Prouzet and M.~Odunlami and E.~Duquesne and A.~Boussouar},
  title = {{Analysis and visualization of the glass eel behavior (Anguilla anguilla) in the Adour estuary and estimate of its upstream migration speed}},
  note = {\url{http://dx.doi.org/10.1051/alr/2009041}},
  journal = {Aquatic Living Resources},
  year = 2009,
  volume = 22,
  number = 4,
  pages = {525--534},
  month = dec
}
[2] H. Class et al. A benchmark study on problems related to CO2 storage in geologic formations. Computational Geosciences, 13(4):409--434, December 2009. http://dx.doi.org/10.1007/s10596-009-9146-x.
@article{Class_2009,
  author = {H.~Class and others},
  title = {{A benchmark study on problems related to CO$_2$ storage in geologic formations}},
  journal = {Computational Geosciences},
  year = 2009,
  volume = 13,
  number = 4,
  pages = {409--434},
  month = dec,
  note = {\url{http://dx.doi.org/10.1007/s10596-009-9146-x}}
}
[3] B. S. Kirk and G. F. Carey. A parallel, adaptive finite element scheme for modeling chemotactic biological systems. Communications in Numerical Methods in Engineering, 25(12):1162--1185, December 2009. http://dx.doi.org/10.1002/cnm.1173.
@article{Kirk_2009c,
  author = {B.~S.~Kirk and G.~F.~Carey},
  title = {A parallel, adaptive finite element scheme for modeling chemotactic biological systems},
  journal = {Communications in Numerical Methods in Engineering},
  volume = 25,
  number = 12,
  pages = {1162--1185},
  month = dec,
  year = 2009,
  note = {\url{http://dx.doi.org/10.1002/cnm.1173}}
}
[4] D. J. Knezevic and E. Süli. A heterogeneous alternating-direction method for a micro-macro dilute polymeric fluid model. European Series in Applied and Industrial Mathematics: Mathematical Modelling and Numerical Analysis, 43(6):1117--1156, November 2009. http://dx.doi.org/10.1051/m2an/2009034.
@article{Knezevic_2009d,
  author = {D.~J.~Knezevic and E.~S\"{u}li},
  title = {A heterogeneous alternating-direction method for a micro-macro dilute polymeric fluid model},
  note = {\url{http://dx.doi.org/10.1051/m2an/2009034}},
  journal = {European Series in Applied and Industrial Mathematics: Mathematical Modelling and Numerical Analysis},
  year = 2009,
  volume = 43,
  number = 6,
  pages = {1117--1156},
  month = nov
}
[5] L. Antiga, R. N. Planken, K. Van Canneyt, L. Botti, A. Caroli, B. Ene-Iordache, J. Tordoir, P. Verdonck, and A. Remuzzi. Non-linear resistance associated to complex geometry at high flow rates in vascular access for hemodialysis. In Olaf Dössel and Wolfgang C. Schlegel, editors, World Congress on Medical Physics and Biomedical Engineering, pages 543--546, Munich, Germany, September 7--12, 2009. http://dx.doi.org/10.1007/978-3-642-03885-3.
@inproceedings{Antiga_2009,
  author = {L.~Antiga and R.~N.~Planken and K.~{Van Canneyt} and L.~Botti and A.~Caroli and B.~Ene-Iordache and J.~Tordoir and P.~Verdonck and A.~Remuzzi},
  title = {Non-linear resistance associated to complex geometry at high flow rates in vascular access for hemodialysis},
  booktitle = {{World Congress on Medical Physics and Biomedical Engineering}},
  address = {Munich, Germany},
  editor = {Olaf D\"{o}ssel and Wolfgang C. Schlegel},
  pages = {543--546},
  month = sep # {~7--12,},
  year = 2009,
  note = {\url{http://dx.doi.org/10.1007/978-3-642-03885-3}}
}
[6] M. F. Barone, I. Kalashnikova, M. R. Brake, and D. J. Segalman. Reduced order modeling of fluid/structure interaction. Technical Report SAND2009-7189, Sandia National Laboratories, September 2009. http://tinyurl.com/zg8l3xl.
@techreport{Barone_2009b,
  author = {M.~F.~Barone and I.~Kalashnikova and M.~R.~Brake and D.~J.~Segalman},
  title = {Reduced order modeling of fluid/structure interaction},
  institution = {Sandia National Laboratories},
  month = sep,
  year = 2009,
  number = {SAND2009-7189},
  note = {\url{http://tinyurl.com/zg8l3xl}}
}
[7] Y. Lu and A. F. Chatziioannou. A parallel adaptive finite element method for the simulation of photon migration with the radiative-transfer-based model. Communications in Numerical Methods in Engineering, 25(6):751--770, June 2009. http://dx.doi.org/10.1002/cnm.1167.
@article{Lu_2009b,
  author = {Y.~Lu and A.~F.~Chatziioannou},
  title = {A parallel adaptive finite element method for the simulation of photon migration with the radiative-transfer-based model},
  journal = {Communications in Numerical Methods in Engineering},
  month = jun,
  year = 2009,
  volume = 25,
  number = 6,
  pages = {751--770},
  note = {\url{http://dx.doi.org/10.1002/cnm.1167}}
}
[8] M. Auf der Maur, M. Povolotskyi, F. Sacconi, G. Romano, G. Penazzi, A. Pecchia, and A. Di Carlo. Multiscale-multiphysics simulation of nanostructured devices: The TiberCAD project. In 13th International Workshop on Computational Electronics (IWCE '09), Beijing, China, May 27--29, 2009. Institute of Electrical and Electronic Engineers (IEEE). http://ieeexplore.ieee.org/iel5/5091069/5091070/05091126.pdf.
@inproceedings{AufderMaur_2009,
  author = {M.~{Auf der Maur} and M.~Povolotskyi and F.~Sacconi and G.~Romano and G.~Penazzi and A.~Pecchia and A.~{Di Carlo}},
  title = {{Multiscale-multiphysics simulation of nanostructured devices: The TiberCAD project}},
  booktitle = {{13th International Workshop on Computational Electronics (IWCE '09)}},
  address = {Beijing, China},
  publisher = {Institute of Electrical and Electronic Engineers (IEEE)},
  month = may # {~27--29,},
  year = 2009,
  note = {\url{http://ieeexplore.ieee.org/iel5/5091069/5091070/05091126.pdf}}
}
[9] D. Gaston, G. Hansen, and C. Newman. MOOSE: A parallel computational framework for coupled systems of nonlinear equations. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7--9, 2009. http://tinyurl.com/hotmrlb.
@conference{Gaston_2009c,
  author = {D.~Gaston and G.~Hansen and C.~Newman},
  title = {{MOOSE: A parallel computational framework for coupled systems of nonlinear equations}},
  booktitle = {International Conference on Mathematics, Computational Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = 2009,
  note = {\url{http://tinyurl.com/hotmrlb}}
}
[10] H. Park, D. Gaston, S. Kadioglu, D. Knoll, R. Martineau, W. Taitano, and D. Lebrun-Grandié. Tightly coupled multiphysics simulations for pebble bed reactors. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7--9, 2009. http://tinyurl.com/zd3hbur.
@conference{Park_2009,
  author = {H.~Park and D.~Gaston and S.~Kadioglu and D.~Knoll and R.~Martineau and W.~Taitano and D.~Lebrun-Grandi\'{e}},
  title = {Tightly coupled multiphysics simulations for pebble bed reactors},
  booktitle = {International Conference on Mathematics, Computational Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = 2009,
  note = {\url{http://tinyurl.com/zd3hbur}}
}
[11] V. S. Mahadevan, J. C. Ragusa, and V. Mousseau. Verification of multiphysics software: Space and time convergence studies for nonlinearly coupled applications. In International Conference on Mathematics, Computational Methods & Reactor Physics (M&C 2009), Saratoga Springs, New York, May 7--9, 2009. http://tinyurl.com/hzscthu.
@conference{Mahadevan_2009,
  author = {V.~S.~Mahadevan and J.~C.~Ragusa and V.~Mousseau},
  title = {{Verification of multiphysics software: Space and time convergence studies for nonlinearly coupled applications}},
  booktitle = {International Conference on Mathematics, Computational Methods \& Reactor Physics (M\&C 2009)},
  address = {Saratoga Springs, New York},
  month = may # {~7--9,},
  year = 2009,
  note = {\url{http://tinyurl.com/hzscthu}}
}
[12] M. F. Barone, I. Kalashnikova, D. J. Segalman, and H. K. Thornquist. Stable Galerkin reduced order models for linearized compressible flow. Journal of Computational Physics, 228(6):1932--1946, April 2009. http://dx.doi.org/10.1016/j.jcp.2008.11.015.
@article{Barone_2009,
  author = {M.~F.~Barone and I.~Kalashnikova and D.~J.~Segalman and H.~K.~Thornquist},
  title = {{Stable Galerkin reduced order models for linearized compressible flow}},
  journal = {Journal of Computational Physics},
  volume = 228,
  number = 6,
  pages = {1932--1946},
  year = 2009,
  month = apr,
  note = {\url{http://dx.doi.org/10.1016/j.jcp.2008.11.015}}
}
[13] M. Polidori. Set up and preliminary assessment of a 3D numerical model for the thermo-fluid dynamics analysis of an open square lattice core of a lead cooled reactor. Technical Report RSE/2009/84, Ente per le Nuove tecnologie, l'Energia e l'Ambiente (ENEA), March 2009. http://tinyurl.com/p7wrtmj.
@techreport{Polidori_2009,
  author = {M.~Polidori},
  title = {{Set up and preliminary assessment of a 3D numerical model for the thermo-fluid dynamics analysis of an open square lattice core of a lead cooled reactor}},
  institution = {Ente per le Nuove tecnologie, l'Energia e l'Ambiente (ENEA)},
  number = {RSE/2009/84},
  year = 2009,
  month = mar,
  note = {\url{http://tinyurl.com/p7wrtmj}}
}
[14] S. Lu et al. Multiscale modeling in rodent ventricular myocytes. IEEE Engineering in Medicine and Biology Magazine, 28(2):46--57, March 2009. https://dx.doi.org/10.1109/MEMB.2009.931787.
@article{S_Lu_2009,
  author = {S.~Lu and others},
  title = {Multiscale modeling in rodent ventricular myocytes},
  journal = {IEEE Engineering in Medicine and Biology Magazine},
  year = 2009,
  month = mar,
  volume = 28,
  number = 2,
  pages = {46--57},
  note = {\url{https://dx.doi.org/10.1109/MEMB.2009.931787}}
}
[15] B. S. Kirk. The influence of shock layer instability on surface heat transfer in hypervelocity flows and its relevance in planetary entry vehicle design. In 47th AIAA Aerospace Sciences Meeting, Orlando, Florida, January 5--8, 2009. Paper no. AIAA 2009-730, http://arc.aiaa.org/doi/abs/10.2514/6.2009-730.
@inproceedings{Kirk_2009b,
  author = {B.~S.~Kirk},
  title = {The influence of shock layer instability on surface heat transfer in hypervelocity flows and its relevance in planetary entry vehicle design},
  booktitle = {{47th AIAA Aerospace Sciences Meeting}},
  address = {Orlando, Florida},
  month = jan # {~5--8,},
  year = 2009,
  note = {Paper no. AIAA 2009-730, \url{http://arc.aiaa.org/doi/abs/10.2514/6.2009-730}}
}
[16] Y. Zhu, X. Luo, and R. Ogden. Three-dimensional nonlinear analysis of axisymmetric deformation of elastic cylindrical tubes. Poster, http://www.maths.gla.ac.uk/~xl/posters/poster-yzhu-xyl.pdf, 2009.
@misc{Zhu_2009,
  author = {Y.~Zhu and X.~Luo and R.~Ogden},
  title = {Three-dimensional nonlinear analysis of axisymmetric deformation of elastic cylindrical tubes},
  year = 2009,
  howpublished = {Poster, \url{http://www.maths.gla.ac.uk/~xl/posters/poster-yzhu-xyl.pdf}}
}
[17] N. M. Abukhdeir and A. D. Rey. Shape-dynamic growth, structure, and elasticity of homogeneously oriented spherulites in an isotropic/smectic-A mesophase transition. Liquid Crystals, 36(10--11):1125--1137, 2009. http://dx.doi.org/10.1080/02678290902878754.
@article{Abukhdeir_2009,
  author = {N.~M.~Abukhdeir and A.~D.~Rey},
  title = {{Shape-dynamic growth, structure, and elasticity of homogeneously oriented spherulites in an isotropic/smectic-A mesophase transition}},
  journal = {Liquid Crystals},
  year = 2009,
  volume = 36,
  number = {10--11},
  pages = {1125--1137},
  note = {\url{http://dx.doi.org/10.1080/02678290902878754}}
}
[18] M. Blome, H. R. Maurer, and K. Schmidt. Advances on 3D geoelectric forward solver techniques. Geophysical Journal International, 176(3):740--752, 2009. http:dx.doi.org/10.1111/j.1365-246X.2008.04006.x.
@article{Blome_2009,
  author = {M.~Blome and H.~R.~Maurer and K.~Schmidt},
  title = {{Advances on 3D geoelectric forward solver techniques}},
  journal = {Geophysical Journal International},
  year = 2009,
  volume = 176,
  number = 3,
  pages = {740--752},
  note = {\url{http:dx.doi.org/10.1111/j.1365-246X.2008.04006.x}}
}
[19] M. Auf der Maur, M. Povolotskyi, F. Sacconi, A. Pecchia, G. Romano, G. Penazzi, and A. Di Carlo. TiberCAD: towards multiscale simulation of optoelectronic devices. Optical and Quantum Electronics, 40(14):1077--1083, 2009. http://dx.doi.org/10.1007/s11082-009-9272-7.
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  author = {M.~{Auf der Maur} and M.~Povolotskyi and F.~Sacconi and A.~Pecchia and G.~Romano and G.~Penazzi and A.~{Di Carlo}},
  title = {{TiberCAD: towards multiscale simulation of optoelectronic devices}},
  pages = {1077--1083},
  year = 2009,
  journal = {Optical and Quantum Electronics},
  volume = 40,
  number = 14,
  note = {\url{http://dx.doi.org/10.1007/s11082-009-9272-7}}
}
[20] D. J. Knezevic and E. Süli. A deterministic multiscale approach for simulating dilute polymeric fluids. In Lecture Notes in Computational Science and Engineering, BAIL 2008 - Boundary and Interior Layers, volume 69, pages 23--38. Springer, 2009. http://dx.doi.org/10.1007/978-3-642-00605-0.
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  author = {D.~J.~Knezevic and E.~S\"{u}li},
  title = {A deterministic multiscale approach for simulating dilute polymeric fluids},
  booktitle = {Lecture Notes in Computational Science and Engineering, BAIL 2008 - Boundary and Interior Layers},
  publisher = {Springer},
  pages = {23--38},
  year = 2009,
  volume = 69,
  note = {\url{http://dx.doi.org/10.1007/978-3-642-00605-0}}
}
[21] Y. Lu, H. B. Machado, A. Douraghy, D. Stout, H. Herschman, and A. F. Chatziioannou. Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework. Optics Express, 17(19):16681--16695, 2009. http://dx.doi.org/10.1364/OE.17.016681.
@article{Lu_2009,
  author = {Y.~Lu and H.~B.~Machado and A.~Douraghy and D.~Stout and H.~Herschman and A.~F.~Chatziioannou},
  title = {Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework},
  journal = {Optics Express},
  number = 19,
  pages = {16681--16695},
  volume = 17,
  year = 2009,
  note = {\url{http://dx.doi.org/10.1364/OE.17.016681}}
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[22] D. Xu, J. Stare, and A. L. Cooksy. Solving the vibrational Schrödinger equation on an arbitrary multidimensional potential energy surface by the finite element method. Computer Physics Communications, 180(11):2079--2094, 2009. http://dx.doi.org/10.1016/j.cpc.2009.06.010, San Diego State University Computational Science Research Center Tech. Rep CSRCR2008-26.
@article{Xu_2009,
  author = {D.~Xu and J.~Stare and A.~L.~Cooksy},
  title = {Solving the vibrational {S}chr\"{o}dinger equation on an arbitrary multidimensional potential energy surface by the finite element method},
  journal = {Computer Physics Communications},
  volume = 180,
  number = 11,
  pages = {2079--2094},
  year = 2009,
  note = {\url{http://dx.doi.org/10.1016/j.cpc.2009.06.010}, San Diego State University Computational Science Research Center Tech. Rep CSRCR2008-26}
}
[23] D. Gaston, C. Newman, G. Hansen, and D. Lebrun-Grandié. MOOSE: A parallel computational framework for coupled systems of nonlinear equations. Nuclear Engineering and Design, 239(10):1768--1778, 2009. http://dx.doi.org/10.1016/j.nucengdes.2009.05.021.
@article{Gaston_2009b,
  author = {D.~Gaston and C.~Newman and G.~Hansen and D.~Lebrun-Grandi\'{e}},
  title = {{MOOSE}: A parallel computational framework for coupled systems of nonlinear equations},
  journal = {Nuclear Engineering and Design},
  volume = 239,
  number = 10,
  pages = {1768--1778},
  year = 2009,
  note = {\url{http://dx.doi.org/10.1016/j.nucengdes.2009.05.021}}
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[24] I. A. Jones, W. Ruijter, and A. C. Long. A novel tetrahedral element for static and dynamic analysis of laminated composites. Journal of Physics: Conference Series, 181:012042 (8 pages), 2009. http://dx.doi.org/10.1088/1742-6596/181/1/012042.
@article{Jones_2009,
  author = {I.~A.~Jones and W.~Ruijter and A.~C.~Long},
  title = {A novel tetrahedral element for static and dynamic analysis of laminated composites},
  journal = {Journal of Physics: Conference Series},
  volume = 181,
  pages = {012042 (8 pages)},
  note = {\url{http://dx.doi.org/10.1088/1742-6596/181/1/012042}},
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[25] D. Gaston, G. Hansen, S. Kadioglu, D. A. Knoll, C. Newman, H. Park, C. Permann, and W. Taitano. Parallel multiphysics algorithms and software for computational nuclear engineering. Journal of Physics: Conference Series, 180:012012 (10 pages), 2009. http://dx.doi.org/10.1088/1742-6596/180/1/012012.
@article{Gaston_2009,
  author = {D.~Gaston and G.~Hansen and S.~Kadioglu and D.~A.~Knoll and C.~Newman and H.~Park and C.~Permann and W.~Taitano},
  title = {Parallel multiphysics algorithms and software for computational nuclear engineering},
  journal = {Journal of Physics: Conference Series},
  volume = 180,
  pages = {012012 (10 pages)},
  year = 2009,
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[26] M. P. Lüthi. Transient response of idealized glaciers to climate variations. Journal of Glaciology, 55(193):918--930, 2009. http://tinyurl.com/onxcsse.
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  author = {M.~P.~L{\"u}thi},
  title = {Transient response of idealized glaciers to climate variations},
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  year = 2009,
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[27] A. M. P. Valli, R. N. Elias, G. F. Carey, and A. L. G. A. Coutinho. PID adaptive control of incremental and arclength continuation in nonlinear applications. International Journal for Numerical Methods in Fluids, 61(11):1181--1200, 2009. http://dx.doi.org/10.1002/fld.1998.
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  title = {{PID adaptive control of incremental and arclength continuation in nonlinear applications}},
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[28] J. Biermann, O. von Estorff, S. Petersen, and C. Wenterodt. Higher order finite and infinite elements for the solution of Helmholtz problems. Computer Methods in Applied Mechanics and Engineering, 198(13--14):1171--1188, 2009. http://dx.doi.org/10.1016/j.cma.2008.11.009.
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[29] B. S. Kirk. Multidimensional assessment of modeling error in typical high-speed wind-tunnel heat-transfer data-reduction schemes. AIAA Journal of Thermophysics and Heat Transfer, 23(1):186--191, January 2009. http://dx.doi.org/10.2514/1.35989.
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  title = {Multidimensional assessment of modeling error in typical high-speed wind-tunnel heat-transfer data-reduction schemes},
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  year = 2009,
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2008

[1] J. Brown. Scalable solvers for optimal control of a power-law fluid. Poster, December 15--19, 2008. American Geophysical Union (AGU) Fall Meeting.
@misc{Brown_2008,
  author = {J.~Brown},
  title = {Scalable solvers for optimal control of a power-law fluid},
  note = {{American Geophysical Union (AGU) Fall Meeting}},
  year = 2008,
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[2] A. Cervone and S. Manservisi. A three-dimensional CFD program for the simulation of the thermo-hydraulic behaviour of an open core liquid metal reactor. Technical Report RSE/2009/85, ENEA: Ente per le Nuove tecnologie, l'Energia e l'Ambiente, December 2008. http://tinyurl.com/p66arrs.
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  title = {{A three-dimensional CFD program for the simulation of the thermo-hydraulic behaviour of an open core liquid metal reactor}},
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[3] A. Hawkins and J. T. Oden. Toward a predictive model of tumor growth. Technical report, Institute for Computational Engineering and Sciences (ICES), The University of Texas at Austin, November 2008. http://tinyurl.com/hhn2qfj.
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  title = {Toward a predictive model of tumor growth},
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[5] V. S. Mahadevan and J. C. Ragusa. High-order spatio-temporal schemes for coupled, multi-physics reactor simulations. Technical report, Idaho National Laboratory, September 2008.
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[6] J. J. Camata, C. A. Henao, and A. L. G. A. Coutinho. Reduced integration with hourglass stabilization for bi-linear quadrilateral elements in libMesh. In Proceedings of the Fifth National Congress of Mechanical Engineering, Salvador, Bahia, Brazil, August 18--21, 2008. http://tinyurl.com/hl5gvfe.
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[8] M. Piccinelli, L. Botti, B. Ene-Iordache, A. Remuzzi, A. Veneziani, and L. Antiga. Link between vortex structures and Voronoi diagram in cerebral aneurysms. Journal of Biomechanics, 41, Supplement 1:S12, July 2008.
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[9] K. Van Canneyt, R. Kaminsky, L. Botti, L. Antiga, J. Tordoir, P. Verdonck, and S. Eloot. Can a kinked arterio-venous graft cause instable flow? A patient-specific validated computational study. Journal of Biomechanics, 41(Supplement 1):S210, July 2008. http://dx.doi.org/10.1016/S0021-9290(08)70210-0.
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[15] V. M. Kolodkin, V. S. Knyazhin, M. V. Kolodkin, and V. M. Senopal'nikov. Design of the technology of the blacksmith mold. News of the Udmurtian State University, Physics and Chemistry Section, 1:120--128, February 2008. In Russian.
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[16] M. F. Barone, D. J. Segalman, H. Thornquist, and I. Kalashnikova. Galerkin reduced order models for compressible flow with structural interaction. In 46th AIAA Aerospace Sciences Meeting and Exhibit, Reno, Nevada, 2008. http://dx.doi.org/10.2514/6.2008-612.
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[17] O. von Estorff, S. Petersen, and D. Dreyer. Efficient infinite elements based on Jacobi polynomials. In Steffen Marburg and Bodo Nolte, editors, Computational Acoustics of Noise Propagation in Fluids--Finite and Boundary Element Methods, pages 231--250. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/978-3-540-77448-8_9.
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[18] E. De Sturler, G. H. Paulino, and S. Wang. Topology optimization with adaptive mesh refinement. In J. F. Abel and J. R. Cooke, editors, Proceedings of the 6th International Conference on Computation of Shell and Spatial Structures (IASS-IACM 2008), Ithaca, New York, 2008. Cornell University. http://tinyurl.com/hkjmbzc.
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[19] R. H. Stogner, G. F. Carey, and B. T. Murray. Approximation of Cahn--Hilliard diffuse interface models using parallel adaptive mesh refinement and coarsening with C1 elements. International Journal for Numerical Methods in Engineering, 76(5):636--661, 2008. http://dx.doi.org/10.1002/nme.2337.
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[20] S. Berrone and E. Süli. Two-sided a posteriori error bounds for incompressible quasi-Newtonian flows. IMA Journal of Numerical Analysis, 28(2):382--421, 2008. http://dx.doi.org/10.1093/imanum/drm017.
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[21] B. S. Kirk and G. F. Carey. Development and validation of a SUPG finite element scheme for the compressible Navier--Stokes equations using a modified inviscid flux discretization. International Journal for Numerical Methods in Fluids, 57(3):265--293, 2008. http://dx.doi.org/10.1002/fld.1635.
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  title = {{Development and validation of a SUPG finite element scheme for the compressible Navier--Stokes equations using a modified inviscid flux discretization}},
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[22] M. Brinkmeier, U. Nackenhorst, S. Petersen, and O. von Estorff. A numerical model for the simulation of tire rolling noise. Journal of Sound and Vibration, 309(1--2):20--39, January 2008. http://dx.doi.org/10.1016/j.jsv.2006.11.040.
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[23] Y. Lu and A. F. Chatziioannou. Parallel adaptive finite element simulation for optical molecular imaging with simplified spherical harmonics approximation. In P. Sellin, editor, Nuclear Science Symposium Conference Record (NSS08), pages 4039--4042, Dresden, Germany, 2008. IEEE. http://dx.doi.org/10.1109/NSSMIC.2008.4774171.
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2007

[1] M. Anderson and J.-H. Kimn. A numerical approach to space-time finite elements for the wave equation. Journal of Computational Physics, 226:466--476, September 2007. http://dx.doi.org/10.1016/j.jcp.2007.04.021.
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[2] M. R. F. Kidner, K. Idrisi, J. P. Carneal, and M. E. Johnson. Comparison of experiment, finite element, and wave based models for mass inclusions in poro-elastic layers. In Proceedings of the 14th International Congress on Sound & Vibration (ICSV14), Cairns, Australia, July 9--12, 2007. http://tinyurl.com/nocpu6h.
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[3] J. Steensland and J. W. Peterson. A study of dynamically adaptive partitioning for AMR. In Proceedings of the 2007 International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA'07) Volume 2, pages 503--509, Las Vegas, Nevada, June 25--28, 2007. CSREA Press. ISBN: 1-60132-021-3.
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[4] M. Auf der Maur, M. Povolotskyi, F. Sacconi, and A. di Carlo. TIBERCAD: A new multiscale simulator for electronic and optoelectronic devices. Superlattices and Microstructures, 41:381--385, May 2007. http://dx.doi.org/10.1016/j.spmi.2007.03.011.
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[5] R. H. Stogner and G. F. Carey. C1 macroelements in adaptive finite element methods. International Journal for Numerical Methods in Engineering, 70(9):1076--1095, May 2007. http://dx.doi.org/10.1002/nme.1912.
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[6] K. Nam and M. M. Aral. Optimal placement of monitoring sensors in lakes. In Proceedings of the 2007 Georgia Water Resources Conference, Athens, Georgia, March 27--29, 2007. http://tinyurl.com/hmwj83z.
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[7] J. Biermann, O. von Estorff, S. Petersen, and H. Schmidt. Computational model to investigate the sound radiation from rolling tires. Tire Science and Technology, 35(3):209--225, 2007. http://dx.doi.org/10.2346/1.2768608.
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[8] J. W. Peterson, G. F. Carey, D. J. Knezevic, and B. T. Murray. Adaptive finite element methodology for tumor angiogenesis modeling. International Journal for Numerical Methods in Engineering, 69(6):1212--1238, 2007. http://dx.doi.org/10.1002/nme.1802.
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2006

[1] S. Berrone. Robust a posteriori error estimates for finite element discretizations of the heat equation with discontinuous coefficients. Mathematical Modelling and Numerical Analysis (M2AN), 40(6):991--1021, November 2006. http://dx.doi.org/10.1051/m2an:2006034.
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[2] J. J. Crookston, W. Ruijter, A. C. Long, and I. A. Jones. Modelling mechanical performance including damage development for textile composites using a grid-based finite element method with adaptive mesh refinement. In Proceedings of the 8th International Conference on Textile Composites (TEXCOMP-8), Nottingham, UK, October 16--18, 2006.
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[3] D. J. Knezevic. Finite element methods for deterministic simulation of polymeric fluids. Technical Report NA-06/19, Oxford University Computing Laboratory, October 2006. http://tinyurl.com/hcvfxln.
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[4] M. Schindler, P. Talkner, and P. Hänggi. Computing stationary free-surface shapes in microfluidics. Physics of Fluids, 18(10):103303, October 2006. http://dx.doi.org/10.1063/1.2361291.
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[5] L. Catabriga, J. J. Camata, A. M. P. Valli, A. L. G. A. Coutinho, and G. F. Carey. Reordering effects on preconditioned Krylov methods in AMR solutions of flow and transport. In Proceedings of the XXVII Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE), Belém, Pará, Brazil, September 3--6, 2006. Brazilian Assoc. for Comp. Mechanics & Latin American Assoc. of Comp. Methods in Engineering. Paper CIL04-557, http://preview.tinyurl.com/h6p6sen.
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  author = {L.~Catabriga and J.~J.~Camata and A.~M.~P.~Valli and A.~L.~G.~A.~Coutinho and G.~F.~Carey},
  title = {{Reordering effects on preconditioned Krylov methods in AMR solutions of flow and transport}},
  booktitle = {{Proceedings of the XXVII Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE)}},
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  year = 2006,
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[6] A. Basmat, M. Markiewicz, and S. Petersen. Interaction of a second-order solitary wave with an array of four vertical cylinders. In Proceedings of the 25th International Conference on Offshore Mechanics and Arctic Engineering, pages 209--216, Hamburg, Germany, June 4--9, 2006. ASME. http://dx.doi.org/10.1115/OMAE2006-92185.
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  author = {A.~Basmat and M.~Markiewicz and S.~Petersen},
  title = {Interaction of a second-order solitary wave with an array of four vertical cylinders},
  booktitle = {{Proceedings of the 25th International Conference on Offshore Mechanics and Arctic Engineering}},
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  month = jun # {~4--9,},
  year = 2006,
  note = {\url{http://dx.doi.org/10.1115/OMAE2006-92185}}
}
[7] P. Simedrea, L. Antiga, and D. A. Steinman. Towards a new framework for simulating magnetic resonance imaging. In First Canadian Student Conference on Biomedical Computing (CSCBC 2006), Kingston, Ontario, Canada, March 17--19, 2006. http://preview.tinyurl.com/zld9lzj.
@inproceedings{Simedrea_2006b,
  author = {P.~Simedrea and L.~Antiga and D.~A.~Steinman},
  title = {Towards a new framework for simulating magnetic resonance imaging},
  booktitle = {{First Canadian Student Conference on Biomedical Computing (CSCBC 2006)}},
  address = {Kingston, Ontario, Canada},
  month = mar # {~17--19,},
  year = 2006,
  note = {\url{http://preview.tinyurl.com/zld9lzj}}
}
[8] J. J. Marichalar, W. C. Rochelle, B. S. Kirk, and C. H. Campbell. BLIMPK/Streamline surface catalytic heating predictions on the space shuttle orbiter. In 44th AIAA Aerospace Sciences Meeting and Exhibit, Reno, Nevada, January 9--12, 2006. http://arc.aiaa.org/doi/abs/10.2514/6.2006-180.
@inproceedings{Marichalar_2006b,
  author = {J.~J.~Marichalar and W.~C.~Rochelle and B.~S.~Kirk and C.~H.~Campbell},
  title = {{BLIMPK/Streamline surface catalytic heating predictions on the space shuttle orbiter}},
  booktitle = {{44th AIAA Aerospace Sciences Meeting and Exhibit}},
  address = {Reno, Nevada},
  month = jan # {~9--12,},
  year = 2006,
  note = {\url{http://arc.aiaa.org/doi/abs/10.2514/6.2006-180}}
}
[9] P. Simedrea, L. Antiga, and D. A. Steinman. FE-MRI: Simulation of MRI using arbitrary finite elements. Proceedings of the International Society for Magnetic Resonance in Medicine, 14:2946, 2006. http://tinyurl.com/ntov2um.
@article{Simedrea_2006,
  author = {P.~Simedrea and L.~Antiga and D.~A.~Steinman},
  title = {{FE-MRI: Simulation of MRI using arbitrary finite elements}},
  journal = {Proceedings of the International Society for Magnetic Resonance in Medicine},
  year = 2006,
  volume = 14,
  pages = {2946},
  note = {\url{http://tinyurl.com/ntov2um}}
}
[10] O. von Estorff and S. Petersen. Vibro-acoustic investigations using finite and infinite elements. Proceedings of the Gesellschaft für Angewandte Mathematik und Mechanik (GAMM) Annual Meeting 2006 (PAMM), 6(1):615--616, 2006. http://dx.doi.org/10.1002/pamm.200610288.
@article{Estorff_2006,
  author = {O.~von~Estorff and S.~Petersen},
  title = {Vibro-acoustic investigations using finite and infinite elements},
  journal = {{Proceedings of the Gesellschaft f\"{u}r Angewandte Mathematik und Mechanik (GAMM) Annual Meeting 2006 (PAMM)}},
  year = 2006,
  volume = 6,
  number = 1,
  pages = {615--616},
  note = {\url{http://dx.doi.org/10.1002/pamm.200610288}}
}
[11] J. J. Marichalar, W. C. Rochelle, B. S. Kirk, and C. H. Campbell. Boundary layer/streamline surface catalytic heating predictions on space shuttle orbiter. Journal of Spacecraft and Rockets, 43(6):1202--1215, 2006. http://dx.doi.org/10.2514/1.23082.
@article{Marichalar_2006,
  author = {J.~J.~Marichalar and W.~C.~Rochelle and B.~S.~Kirk and C.~H.~Campbell},
  title = {Boundary layer/stream\-line surface catalytic heating predictions on space shuttle orbiter},
  journal = {Journal of Spacecraft and Rockets},
  year = 2006,
  volume = 43,
  number = 6,
  pages = {1202--1215},
  note = {\url{http://dx.doi.org/10.2514/1.23082}}
}
[12] S. Petersen, D. Dreyer, and O. von Estorff. Assessment of finite and spectral element shape functions for efficient iterative simulations of interior acoustics. Computer Methods in Applied Mechanics and Engineering, 195(44--47):6463--6478, 2006. http://dx.doi.org/10.1016/j.cma.2006.01.008.
@article{Petersen_2006,
  author = {S.~Petersen and D.~Dreyer and O.~{von Estorff}},
  title = {Assessment of finite and spectral element shape functions for efficient iterative simulations of interior acoustics},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  year = 2006,
  volume = 195,
  number = {44--47},
  pages = {6463--6478},
  note = {\url{http://dx.doi.org/10.1016/j.cma.2006.01.008}}
}
[13] D. Dreyer, S. Petersen, and O. von Estorff. Effectiveness and robustness of improved infinite elements for exterior acoustics. Computer Methods in Applied Mechanics and Engineering, 195(29--32):3591--3607, 2006. http://dx.doi.org/10.1016/j.cma.2005.01.019.
@article{Dreyer_2006,
  author = {D.~Dreyer and S.~Petersen and O.~{von Estorff}},
  title = {Effectiveness and robustness of improved infinite elements for exterior acoustics},
  journal = {Computer Methods in Applied Mechanics and Engineering},
  volume = 195,
  number = {29--32},
  pages = {3591--3607},
  year = 2006,
  note = {\url{http://dx.doi.org/10.1016/j.cma.2005.01.019}}
}

2005

[1] J. J. Camata, L. Catabriga, A. M. P. Valli, A. L. G. A. Coutinho, and G. F. Carey. Numerical Evaluation of the LCD method implemented in the LibMesh library. In Proceedings of the XXVI Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE), Guarapari, Espírito Santo, Brazil, October 19--21, 2005. Brazilian Assoc. for Comp. Mechanics & Latin American Assoc. of Comp. Methods in Engineering. Paper CIL16-692, http://www.inf.ufes.br/~luciac/papers/CIL-0692.pdf.
@inproceedings{Camata_2005,
  author = {J.~J.~Camata and L.~Catabriga and A.~M.~P.~Valli and A.~L.~G.~A.~Coutinho and G.~F.~Carey},
  title = {{Numerical Evaluation of the LCD method implemented in the LibMesh library}},
  booktitle = {{Proceedings of the XXVI Iberian Latin-American Congress on Computational Methods in Engineering (CILAMCE)}},
  address = {Guarapari, Esp\'{i}rito Santo, Brazil},
  publisher = {Brazilian Assoc. for Comp. Mechanics \& Latin American Assoc. of Comp. Methods in Engineering},
  year = 2005,
  month = oct # {~19--21,},
  note = {Paper CIL16-692, \url{http://www.inf.ufes.br/~luciac/papers/CIL-0692.pdf}}
}
[2] G. F. Carey, W. Barth, B. S. Kirk, and J. W. Peterson. Parallel CFD for flow and transport applications including unstructured and adaptive grids. In G. Winter, A. Ecer, J. Periaux, N. Satofuka, and P. Fox, editors, Proceedings of Parallel CFD 2004: Multidisciplinary Applications, Amsterdam, The Netherlands, October 2005. Elsevier Science B.V. ISBN: 0444520244.
@inproceedings{Carey_2005,
  author = {G.~F.~Carey and W.~Barth and B.~S.~Kirk and J.~W.~Peterson},
  title = {{Parallel CFD for flow and transport applications including unstructured and adaptive grids}},
  booktitle = {Proceedings of Parallel CFD 2004:  Multidisciplinary Applications},
  editor = {G.~Winter and A.~Ecer and J.~Periaux and N.~Satofuka and P.~Fox},
  publisher = {Elsevier Science B.V.},
  address = {Amsterdam, The Netherlands},
  month = oct,
  year = 2005,
  note = {ISBN: 0444520244}
}

2004

[1] G. F. Carey, W. Barth, J. A. Woods, B. S. Kirk, M. L. Anderson, S. Chow, and W. Bangerth. Modeling error and constitutive relations in simulation of flow and transport. International Journal for Numerical Methods in Fluids, 46(12):1211--1236, December 2004. http://dx.doi.org/10.1002/fld.797.
@article{Carey_2004b,
  author = {G.~F.~Carey and W.~Barth and J.~A.~Woods and B.~S.~Kirk and M.~L.~Anderson and S.~Chow and W.~Bangerth},
  title = {Modeling error and constitutive relations in simulation of flow and transport},
  journal = {International Journal for Numerical Methods in Fluids},
  month = dec,
  year = 2004,
  volume = 46,
  number = 12,
  pages = {1211--1236},
  note = {\url{http://dx.doi.org/10.1002/fld.797}}
}
[2] L. Antiga. Imaging and numerical fluid dynamics for the study of the cardiovascular system. In M. Grigioni, editor, III Workshop Bioflumen: Technological innovation and evaluation of medical devices for the cardiovascular system, pages 55--59, Rome, Italy, November 2004. Istituto Superiore di Sanità.
@inproceedings{Antiga_2004,
  author = {L.~Antiga},
  title = {Imaging and numerical fluid dynamics for the study of the cardiovascular system},
  booktitle = {{III Workshop Bioflumen:  Technological innovation and evaluation of medical devices for the cardiovascular system}},
  editor = {M.~Grigioni},
  pages = {55--59},
  publisher = {Istituto Superiore di Sanit\`{a}},
  address = {Rome, Italy},
  month = nov,
  year = 2004
}
[3] G. F. Carey, M. Anderson, B. Carnes, and B. S. Kirk. Some aspects of adaptive grid technology related to boundary and interior layers. Journal of Computational and Applied Mathematics, 166(1):55--86, April 2004. http://dx.doi.org/10.1016/j.cam.2003.09.036.
@article{Carey_2004a,
  author = {G.~F. Carey and M.~Anderson and B.~Carnes and B.~S.~Kirk},
  title = {Some aspects of adaptive grid technology related to boundary and interior layers},
  journal = {Journal of Computational and Applied Mathematics},
  volume = 166,
  number = 1,
  month = apr,
  year = 2004,
  pages = {55--86},
  note = {\url{http://dx.doi.org/10.1016/j.cam.2003.09.036}}
}
[4] S. Petersen, D. Dreyer, and O. von Estorff. Practical considerations of the acoustic FEM for higher frequencies. In Proceedings of the Joint Congress of the French and German Acoustical Societies (CFA/DAGA'04), Strasbourg, France, March 22--25, 2004. http://www.conforg.fr/cfadaga2004/cdrom/data/procs/articles/000696.pdf.
@inproceedings{Petersen_2004,
  author = {S.~Petersen and D.~Dreyer and O.~{von Estorff}},
  title = {{Practical considerations of the acoustic FEM for higher frequencies}},
  booktitle = {{Proceedings of the Joint Congress of the French and German Acoustical Societies (CFA/DAGA'04)}},
  address = {Strasbourg, France},
  month = mar # {~22--25,},
  year = 2004,
  note = {\url{http://www.conforg.fr/cfadaga2004/cdrom/data/procs/articles/000696.pdf}}
}
[5] O. von Estorff and S. Petersen. Fe-reifen-fahr-bahn-modell. In Reports of the Federal Highway Research Institute, Series S: Road construction, volume 37, pages 18--21. Bibliothek der Bundesanstalt für Straßenwesen (BASt), 2004. Approximate English title: “FE tire roadway model,” http://bast.opus.hbz-nrw.de/volltexte/2011/145.
@incollection{vonEstorff_2004,
  author = {O.~{von Estorff} and S.~Petersen},
  title = {FE-reifen-fahr-bahn-modell},
  pages = {18--21},
  year = 2004,
  booktitle = {Reports of the Federal Highway Research Institute, Series S: Road construction},
  volume = 37,
  publisher = {Bibliothek der Bundesanstalt f\"{u}r Stra{\ss}enwesen (BASt)},
  note = {Approximate English title: ``FE tire roadway model,'' \url{http://bast.opus.hbz-nrw.de/volltexte/2011/145}}
}