Manages consistently variables, degrees of freedom, coefficient vectors, matrices and non-linear solvers for implicit systems. More...
#include <nonlinear_implicit_system.h>
Classes | |
class | ComputeBounds |
class | ComputeJacobian |
class | ComputePostCheck |
class | ComputeResidual |
class | ComputeResidualandJacobian |
class | ComputeVectorSubspace |
Public Types | |
typedef NonlinearImplicitSystem | sys_type |
typedef ImplicitSystem | Parent |
typedef std::map< std::string, SparseMatrix< Number > * >::iterator | matrices_iterator |
typedef std::map< std::string, SparseMatrix< Number > * >::const_iterator | const_matrices_iterator |
typedef Number(* | ValueFunctionPointer) (const Point &p, const Parameters &Parameters, const std::string &sys_name, const std::string &unknown_name) |
typedef Gradient(* | GradientFunctionPointer) (const Point &p, const Parameters ¶meters, const std::string &sys_name, const std::string &unknown_name) |
typedef std::map< std::string, NumericVector< Number > * >::iterator | vectors_iterator |
typedef std::map< std::string, NumericVector< Number > * >::const_iterator | const_vectors_iterator |
Public Member Functions | |
NonlinearImplicitSystem (EquationSystems &es, const std::string &name, const unsigned int number) | |
virtual | ~NonlinearImplicitSystem () |
sys_type & | system () |
virtual void | clear () override |
virtual void | reinit () override |
virtual void | solve () override |
virtual std::pair< unsigned int, Real > | get_linear_solve_parameters () const override |
virtual void | assembly (bool get_residual, bool get_jacobian, bool apply_heterogeneous_constraints=false, bool apply_no_constraints=false) override |
virtual std::string | system_type () const override |
unsigned int | n_nonlinear_iterations () const |
Real | final_nonlinear_residual () const |
unsigned | get_current_nonlinear_iteration_number () const |
virtual void | assemble () override |
virtual void | disable_cache () override |
virtual LinearSolver< Number > * | get_linear_solver () const |
virtual void | release_linear_solver (LinearSolver< Number > *) const |
virtual void | assemble_residual_derivatives (const ParameterVector ¶meters) override |
virtual std::pair< unsigned int, Real > | sensitivity_solve (const ParameterVector ¶meters) override |
virtual std::pair< unsigned int, Real > | weighted_sensitivity_solve (const ParameterVector ¶meters, const ParameterVector &weights) override |
virtual std::pair< unsigned int, Real > | adjoint_solve (const QoISet &qoi_indices=QoISet()) override |
virtual std::pair< unsigned int, Real > | weighted_sensitivity_adjoint_solve (const ParameterVector ¶meters, const ParameterVector &weights, const QoISet &qoi_indices=QoISet()) override |
virtual void | adjoint_qoi_parameter_sensitivity (const QoISet &qoi_indices, const ParameterVector ¶meters, SensitivityData &sensitivities) override |
virtual void | forward_qoi_parameter_sensitivity (const QoISet &qoi_indices, const ParameterVector ¶meters, SensitivityData &sensitivities) override |
virtual void | qoi_parameter_hessian (const QoISet &qoi_indices, const ParameterVector ¶meters, SensitivityData &hessian) override |
virtual void | qoi_parameter_hessian_vector_product (const QoISet &qoi_indices, const ParameterVector ¶meters, const ParameterVector &vector, SensitivityData &product) override |
SparseMatrix< Number > & | add_matrix (const std::string &mat_name) |
void | remove_matrix (const std::string &mat_name) |
bool | have_matrix (const std::string &mat_name) const |
const SparseMatrix< Number > * | request_matrix (const std::string &mat_name) const |
SparseMatrix< Number > * | request_matrix (const std::string &mat_name) |
const SparseMatrix< Number > & | get_matrix (const std::string &mat_name) const |
SparseMatrix< Number > & | get_matrix (const std::string &mat_name) |
virtual unsigned int | n_matrices () const override |
virtual void | assemble_qoi (const QoISet &qoi_indices=QoISet()) override |
virtual void | assemble_qoi_derivative (const QoISet &qoi_indices=QoISet(), bool include_liftfunc=true, bool apply_constraints=true) override |
void | init () |
virtual void | reinit_constraints () |
bool | is_initialized () |
virtual void | update () |
virtual void | restrict_solve_to (const SystemSubset *subset, const SubsetSolveMode subset_solve_mode=SUBSET_ZERO) |
bool | is_adjoint_already_solved () const |
void | set_adjoint_already_solved (bool setting) |
virtual void | qoi_parameter_sensitivity (const QoISet &qoi_indices, const ParameterVector ¶meters, SensitivityData &sensitivities) |
virtual bool | compare (const System &other_system, const Real threshold, const bool verbose) const |
const std::string & | name () const |
void | project_solution (FunctionBase< Number > *f, FunctionBase< Gradient > *g=nullptr) const |
void | project_solution (FEMFunctionBase< Number > *f, FEMFunctionBase< Gradient > *g=nullptr) const |
void | project_solution (ValueFunctionPointer fptr, GradientFunctionPointer gptr, const Parameters ¶meters) const |
void | project_vector (NumericVector< Number > &new_vector, FunctionBase< Number > *f, FunctionBase< Gradient > *g=nullptr, int is_adjoint=-1) const |
void | project_vector (NumericVector< Number > &new_vector, FEMFunctionBase< Number > *f, FEMFunctionBase< Gradient > *g=nullptr, int is_adjoint=-1) const |
void | project_vector (ValueFunctionPointer fptr, GradientFunctionPointer gptr, const Parameters ¶meters, NumericVector< Number > &new_vector, int is_adjoint=-1) const |
void | boundary_project_solution (const std::set< boundary_id_type > &b, const std::vector< unsigned int > &variables, FunctionBase< Number > *f, FunctionBase< Gradient > *g=nullptr) |
void | boundary_project_solution (const std::set< boundary_id_type > &b, const std::vector< unsigned int > &variables, ValueFunctionPointer fptr, GradientFunctionPointer gptr, const Parameters ¶meters) |
void | boundary_project_vector (const std::set< boundary_id_type > &b, const std::vector< unsigned int > &variables, NumericVector< Number > &new_vector, FunctionBase< Number > *f, FunctionBase< Gradient > *g=nullptr, int is_adjoint=-1) const |
void | boundary_project_vector (const std::set< boundary_id_type > &b, const std::vector< unsigned int > &variables, ValueFunctionPointer fptr, GradientFunctionPointer gptr, const Parameters ¶meters, NumericVector< Number > &new_vector, int is_adjoint=-1) const |
unsigned int | number () const |
void | update_global_solution (std::vector< Number > &global_soln) const |
void | update_global_solution (std::vector< Number > &global_soln, const processor_id_type dest_proc) const |
const MeshBase & | get_mesh () const |
MeshBase & | get_mesh () |
const DofMap & | get_dof_map () const |
DofMap & | get_dof_map () |
const EquationSystems & | get_equation_systems () const |
EquationSystems & | get_equation_systems () |
bool | active () const |
void | activate () |
void | deactivate () |
void | set_basic_system_only () |
vectors_iterator | vectors_begin () |
const_vectors_iterator | vectors_begin () const |
vectors_iterator | vectors_end () |
const_vectors_iterator | vectors_end () const |
NumericVector< Number > & | add_vector (const std::string &vec_name, const bool projections=true, const ParallelType type=PARALLEL) |
void | remove_vector (const std::string &vec_name) |
bool & | project_solution_on_reinit (void) |
bool | have_vector (const std::string &vec_name) const |
const NumericVector< Number > * | request_vector (const std::string &vec_name) const |
NumericVector< Number > * | request_vector (const std::string &vec_name) |
const NumericVector< Number > * | request_vector (const unsigned int vec_num) const |
NumericVector< Number > * | request_vector (const unsigned int vec_num) |
const NumericVector< Number > & | get_vector (const std::string &vec_name) const |
NumericVector< Number > & | get_vector (const std::string &vec_name) |
const NumericVector< Number > & | get_vector (const unsigned int vec_num) const |
NumericVector< Number > & | get_vector (const unsigned int vec_num) |
const std::string & | vector_name (const unsigned int vec_num) const |
const std::string & | vector_name (const NumericVector< Number > &vec_reference) const |
void | set_vector_as_adjoint (const std::string &vec_name, int qoi_num) |
int | vector_is_adjoint (const std::string &vec_name) const |
void | set_vector_preservation (const std::string &vec_name, bool preserve) |
bool | vector_preservation (const std::string &vec_name) const |
NumericVector< Number > & | add_adjoint_solution (unsigned int i=0) |
NumericVector< Number > & | get_adjoint_solution (unsigned int i=0) |
const NumericVector< Number > & | get_adjoint_solution (unsigned int i=0) const |
NumericVector< Number > & | add_sensitivity_solution (unsigned int i=0) |
NumericVector< Number > & | get_sensitivity_solution (unsigned int i=0) |
const NumericVector< Number > & | get_sensitivity_solution (unsigned int i=0) const |
NumericVector< Number > & | add_weighted_sensitivity_adjoint_solution (unsigned int i=0) |
NumericVector< Number > & | get_weighted_sensitivity_adjoint_solution (unsigned int i=0) |
const NumericVector< Number > & | get_weighted_sensitivity_adjoint_solution (unsigned int i=0) const |
NumericVector< Number > & | add_weighted_sensitivity_solution () |
NumericVector< Number > & | get_weighted_sensitivity_solution () |
const NumericVector< Number > & | get_weighted_sensitivity_solution () const |
NumericVector< Number > & | add_adjoint_rhs (unsigned int i=0) |
NumericVector< Number > & | get_adjoint_rhs (unsigned int i=0) |
const NumericVector< Number > & | get_adjoint_rhs (unsigned int i=0) const |
NumericVector< Number > & | add_sensitivity_rhs (unsigned int i=0) |
NumericVector< Number > & | get_sensitivity_rhs (unsigned int i=0) |
const NumericVector< Number > & | get_sensitivity_rhs (unsigned int i=0) const |
unsigned int | n_vectors () const |
unsigned int | n_vars () const |
unsigned int | n_variable_groups () const |
unsigned int | n_components () const |
dof_id_type | n_dofs () const |
dof_id_type | n_active_dofs () const |
dof_id_type | n_constrained_dofs () const |
dof_id_type | n_local_constrained_dofs () const |
dof_id_type | n_local_dofs () const |
unsigned int | add_variable (const std::string &var, const FEType &type, const std::set< subdomain_id_type > *const active_subdomains=nullptr) |
unsigned int | add_variable (const std::string &var, const Order order=FIRST, const FEFamily=LAGRANGE, const std::set< subdomain_id_type > *const active_subdomains=nullptr) |
unsigned int | add_variables (const std::vector< std::string > &vars, const FEType &type, const std::set< subdomain_id_type > *const active_subdomains=nullptr) |
unsigned int | add_variables (const std::vector< std::string > &vars, const Order order=FIRST, const FEFamily=LAGRANGE, const std::set< subdomain_id_type > *const active_subdomains=nullptr) |
const Variable & | variable (unsigned int var) const |
const VariableGroup & | variable_group (unsigned int vg) const |
bool | has_variable (const std::string &var) const |
const std::string & | variable_name (const unsigned int i) const |
unsigned short int | variable_number (const std::string &var) const |
void | get_all_variable_numbers (std::vector< unsigned int > &all_variable_numbers) const |
unsigned int | variable_scalar_number (const std::string &var, unsigned int component) const |
unsigned int | variable_scalar_number (unsigned int var_num, unsigned int component) const |
const FEType & | variable_type (const unsigned int i) const |
const FEType & | variable_type (const std::string &var) const |
bool | identify_variable_groups () const |
void | identify_variable_groups (const bool) |
Real | calculate_norm (const NumericVector< Number > &v, unsigned int var, FEMNormType norm_type, std::set< unsigned int > *skip_dimensions=nullptr) const |
Real | calculate_norm (const NumericVector< Number > &v, const SystemNorm &norm, std::set< unsigned int > *skip_dimensions=nullptr) const |
void | read_header (Xdr &io, const std::string &version, const bool read_header=true, const bool read_additional_data=true, const bool read_legacy_format=false) |
void | read_legacy_data (Xdr &io, const bool read_additional_data=true) |
template<typename ValType > | |
void | read_serialized_data (Xdr &io, const bool read_additional_data=true) |
void | read_serialized_data (Xdr &io, const bool read_additional_data=true) |
template<typename InValType > | |
std::size_t | read_serialized_vectors (Xdr &io, const std::vector< NumericVector< Number > *> &vectors) const |
std::size_t | read_serialized_vectors (Xdr &io, const std::vector< NumericVector< Number > *> &vectors) const |
template<typename InValType > | |
void | read_parallel_data (Xdr &io, const bool read_additional_data) |
void | read_parallel_data (Xdr &io, const bool read_additional_data) |
void | write_header (Xdr &io, const std::string &version, const bool write_additional_data) const |
void | write_serialized_data (Xdr &io, const bool write_additional_data=true) const |
std::size_t | write_serialized_vectors (Xdr &io, const std::vector< const NumericVector< Number > *> &vectors) const |
void | write_parallel_data (Xdr &io, const bool write_additional_data) const |
std::string | get_info () const |
void | attach_init_function (void fptr(EquationSystems &es, const std::string &name)) |
void | attach_init_object (Initialization &init) |
void | attach_assemble_function (void fptr(EquationSystems &es, const std::string &name)) |
void | attach_assemble_object (Assembly &assemble) |
void | attach_constraint_function (void fptr(EquationSystems &es, const std::string &name)) |
void | attach_constraint_object (Constraint &constrain) |
void | attach_QOI_function (void fptr(EquationSystems &es, const std::string &name, const QoISet &qoi_indices)) |
void | attach_QOI_object (QOI &qoi) |
void | attach_QOI_derivative (void fptr(EquationSystems &es, const std::string &name, const QoISet &qoi_indices, bool include_liftfunc, bool apply_constraints)) |
void | attach_QOI_derivative_object (QOIDerivative &qoi_derivative) |
virtual void | user_initialization () |
virtual void | user_assembly () |
virtual void | user_constrain () |
virtual void | user_QOI (const QoISet &qoi_indices) |
virtual void | user_QOI_derivative (const QoISet &qoi_indices=QoISet(), bool include_liftfunc=true, bool apply_constraints=true) |
virtual void | re_update () |
virtual void | restrict_vectors () |
virtual void | prolong_vectors () |
Number | current_solution (const dof_id_type global_dof_number) const |
unsigned int | n_qois () const |
Number | point_value (unsigned int var, const Point &p, const bool insist_on_success=true) const |
Number | point_value (unsigned int var, const Point &p, const Elem &e) const |
Number | point_value (unsigned int var, const Point &p, const Elem *e) const |
Gradient | point_gradient (unsigned int var, const Point &p, const bool insist_on_success=true) const |
Gradient | point_gradient (unsigned int var, const Point &p, const Elem &e) const |
Gradient | point_gradient (unsigned int var, const Point &p, const Elem *e) const |
Tensor | point_hessian (unsigned int var, const Point &p, const bool insist_on_success=true) const |
Tensor | point_hessian (unsigned int var, const Point &p, const Elem &e) const |
Tensor | point_hessian (unsigned int var, const Point &p, const Elem *e) const |
void | local_dof_indices (const unsigned int var, std::set< dof_id_type > &var_indices) const |
void | zero_variable (NumericVector< Number > &v, unsigned int var_num) const |
bool & | hide_output () |
void | projection_matrix (SparseMatrix< Number > &proj_mat) const |
const Parallel::Communicator & | comm () const |
processor_id_type | n_processors () const |
processor_id_type | processor_id () const |
Static Public Member Functions | |
static std::string | get_info () |
static void | print_info (std::ostream &out=libMesh::out) |
static unsigned int | n_objects () |
static void | enable_print_counter_info () |
static void | disable_print_counter_info () |
Public Attributes | |
std::unique_ptr< NonlinearSolver< Number > > | nonlinear_solver |
std::unique_ptr< DiffSolver > | diff_solver |
SparseMatrix< Number > * | matrix |
bool | zero_out_matrix_and_rhs |
NumericVector< Number > * | rhs |
bool | assemble_before_solve |
bool | use_fixed_solution |
int | extra_quadrature_order |
std::unique_ptr< NumericVector< Number > > | solution |
std::unique_ptr< NumericVector< Number > > | current_local_solution |
Real | time |
std::vector< Number > | qoi |
Protected Types | |
typedef std::map< std::string, std::pair< unsigned int, unsigned int > > | Counts |
Protected Member Functions | |
void | set_solver_parameters () |
virtual void | init_data () override |
virtual void | init_matrices () |
void | project_vector (NumericVector< Number > &, int is_adjoint=-1) const |
void | project_vector (const NumericVector< Number > &, NumericVector< Number > &, int is_adjoint=-1) const |
void | increment_constructor_count (const std::string &name) |
void | increment_destructor_count (const std::string &name) |
Protected Attributes | |
unsigned int | _n_nonlinear_iterations |
Real | _final_nonlinear_residual |
const Parallel::Communicator & | _communicator |
Static Protected Attributes | |
static Counts | _counts |
static Threads::atomic< unsigned int > | _n_objects |
static Threads::spin_mutex | _mutex |
static bool | _enable_print_counter = true |
Manages consistently variables, degrees of freedom, coefficient vectors, matrices and non-linear solvers for implicit systems.
An implicit system is a system that requires the solution of a system of equations. This class has the ability to create and use a non-linear solver to solve the system of equations.
The matrix NonlinearImplicitSystem::matrix and the vector NonlinearImplicitSystem::rhs should be filled during assembly.
Definition at line 54 of file nonlinear_implicit_system.h.
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inherited |
Definition at line 306 of file implicit_system.h.
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inherited |
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protectedinherited |
Data structure to log the information. The log is identified by the class name.
Definition at line 117 of file reference_counter.h.
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inherited |
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inherited |
Matrix iterator typedefs.
Definition at line 305 of file implicit_system.h.
The type of the parent.
Definition at line 79 of file nonlinear_implicit_system.h.
The type of system.
Definition at line 74 of file nonlinear_implicit_system.h.
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inherited |
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inherited |
libMesh::NonlinearImplicitSystem::NonlinearImplicitSystem | ( | EquationSystems & | es, |
const std::string & | name, | ||
const unsigned int | number | ||
) |
Constructor. Optionally initializes required data structures.
Definition at line 35 of file nonlinear_implicit_system.C.
References libMesh::EquationSystems::parameters, libMesh::Real, and libMesh::Parameters::set().
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virtual |
Destructor.
Definition at line 62 of file nonlinear_implicit_system.C.
References clear().
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inlineinherited |
Activates the system. Only active systems are solved.
Definition at line 2073 of file system.h.
References libMesh::System::_active.
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inlineinherited |
true
if the system is active, false
otherwise. An active system will be solved. Definition at line 2065 of file system.h.
References libMesh::System::_active.
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inherited |
Definition at line 1021 of file system.C.
References libMesh::System::add_vector().
Referenced by libMesh::ExplicitSystem::assemble_qoi_derivative(), and libMesh::FEMSystem::assemble_qoi_derivative().
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inherited |
Definition at line 957 of file system.C.
References libMesh::System::add_vector(), and libMesh::System::set_vector_as_adjoint().
Referenced by libMesh::ImplicitSystem::adjoint_solve().
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inherited |
Adds the additional matrix mat_name
to this system. Only allowed prior to assemble()
. All additional matrices have the same sparsity pattern as the matrix used during solution. When not System
but the user wants to initialize the mayor matrix, then all the additional matrices, if existent, have to be initialized by the user, too.
Definition at line 203 of file implicit_system.C.
References libMesh::ImplicitSystem::_can_add_matrices, libMesh::ImplicitSystem::_matrices, libMesh::SparseMatrix< T >::build(), libMesh::ParallelObject::comm(), and libMesh::ImplicitSystem::have_matrix().
Referenced by libMesh::ImplicitSystem::add_system_matrix(), libMesh::EigenTimeSolver::init(), and libMesh::NewmarkSystem::NewmarkSystem().
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inherited |
Definition at line 1051 of file system.C.
References libMesh::System::add_vector().
Referenced by libMesh::ImplicitSystem::assemble_residual_derivatives().
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inherited |
Definition at line 906 of file system.C.
References libMesh::System::add_vector().
Referenced by libMesh::ImplicitSystem::sensitivity_solve().
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inherited |
Adds the variable var
to the list of variables for this system.
Definition at line 1081 of file system.C.
References libMesh::System::_variable_groups, libMesh::System::_variable_numbers, libMesh::System::_variables, libMesh::System::add_variables(), libMesh::VariableGroup::append(), libMesh::System::identify_variable_groups(), libMesh::System::is_initialized(), libMesh::System::n_variable_groups(), libMesh::System::n_vars(), libMesh::System::number(), libMesh::System::variable_name(), and libMesh::System::variable_type().
Referenced by libMesh::DifferentiableSystem::add_second_order_dot_vars(), libMesh::System::add_variable(), libMesh::ErrorVector::plot_error(), and libMesh::System::read_header().
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inherited |
Adds the variable var
to the list of variables for this system. Same as before, but assumes LAGRANGE
as default value for FEType.family
.
Definition at line 1159 of file system.C.
References libMesh::System::add_variable().
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inherited |
Adds the variable var
to the list of variables for this system.
Definition at line 1171 of file system.C.
References libMesh::System::_variable_groups, libMesh::System::_variable_numbers, libMesh::System::_variables, libMesh::System::is_initialized(), libMesh::System::n_components(), libMesh::System::n_vars(), libMesh::System::number(), libMesh::System::variable_name(), and libMesh::System::variable_type().
Referenced by libMesh::System::add_variable(), and libMesh::System::add_variables().
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inherited |
Adds the variable var
to the list of variables for this system. Same as before, but assumes LAGRANGE
as default value for FEType.family
.
Definition at line 1224 of file system.C.
References libMesh::System::add_variables().
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inherited |
Adds the additional vector vec_name
to this system. All the additional vectors are similarly distributed, like the solution
, and initialized to zero.
By default vectors added by add_vector are projected to changed grids by reinit(). To zero them instead (more efficient), pass "false" as the second argument
Definition at line 661 of file system.C.
References libMesh::System::_dof_map, libMesh::System::_is_initialized, libMesh::System::_vector_is_adjoint, libMesh::System::_vector_projections, libMesh::System::_vector_types, libMesh::System::_vectors, libMesh::NumericVector< T >::build(), libMesh::ParallelObject::comm(), libMesh::GHOSTED, libMesh::System::have_vector(), libMesh::NumericVector< T >::init(), libMesh::System::n_dofs(), and libMesh::System::n_local_dofs().
Referenced by libMesh::System::add_adjoint_rhs(), libMesh::System::add_adjoint_solution(), libMesh::System::add_sensitivity_rhs(), libMesh::System::add_sensitivity_solution(), libMesh::ExplicitSystem::add_system_rhs(), libMesh::System::add_weighted_sensitivity_adjoint_solution(), libMesh::System::add_weighted_sensitivity_solution(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::SecondOrderUnsteadySolver::init(), libMesh::UnsteadySolver::init(), libMesh::OptimizationSystem::init_data(), libMesh::ContinuationSystem::init_data(), libMesh::NewmarkSystem::NewmarkSystem(), libMesh::System::read_header(), libMesh::FrequencySystem::set_frequencies(), libMesh::FrequencySystem::set_frequencies_by_range(), and libMesh::FrequencySystem::set_frequencies_by_steps().
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inherited |
Definition at line 989 of file system.C.
References libMesh::System::add_vector(), and libMesh::System::set_vector_as_adjoint().
Referenced by libMesh::ImplicitSystem::weighted_sensitivity_adjoint_solve().
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inherited |
Definition at line 936 of file system.C.
References libMesh::System::add_vector().
Referenced by libMesh::ImplicitSystem::weighted_sensitivity_solve().
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overridevirtualinherited |
Solves for the derivative of each of the system's quantities of interest q in qoi
[qoi_indices] with respect to each parameter in parameters
, placing the result for qoi i
and parameter j
into sensitivities
[i][j].
Uses adjoint_solve() and the adjoint sensitivity method.
Currently uses finite differenced derivatives (partial q / partial p) and (partial R / partial p).
Reimplemented from libMesh::System.
Definition at line 697 of file implicit_system.C.
References std::abs(), libMesh::ImplicitSystem::adjoint_solve(), libMesh::SensitivityData::allocate_data(), libMesh::ExplicitSystem::assemble_qoi(), libMesh::ImplicitSystem::assemble_residual_derivatives(), libMesh::NumericVector< T >::dot(), libMesh::System::get_sensitivity_rhs(), libMesh::QoISet::has_index(), libMesh::System::is_adjoint_already_solved(), std::max(), libMesh::System::n_qois(), libMesh::System::qoi, libMesh::Real, libMesh::ParameterVector::size(), and libMesh::TOLERANCE.
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overridevirtualinherited |
Assembles & solves the linear system (dR/du)^T*z = dq/du, for those quantities of interest q specified by qoi_indices
.
Leave qoi_indices
empty to solve all adjoint problems.
Reimplemented from libMesh::System.
Reimplemented in libMesh::DifferentiableSystem.
Definition at line 372 of file implicit_system.C.
References libMesh::System::add_adjoint_solution(), libMesh::LinearSolver< T >::adjoint_solve(), libMesh::System::assemble_before_solve, libMesh::ExplicitSystem::assemble_qoi_derivative(), libMesh::ImplicitSystem::assembly(), libMesh::DofMap::enforce_adjoint_constraints_exactly(), libMesh::System::get_adjoint_rhs(), libMesh::System::get_adjoint_solution(), libMesh::System::get_dof_map(), libMesh::ImplicitSystem::get_linear_solve_parameters(), libMesh::ImplicitSystem::get_linear_solver(), libMesh::QoISet::has_index(), libMesh::ImplicitSystem::matrix, libMesh::System::n_qois(), and libMesh::ImplicitSystem::release_linear_solver().
Referenced by libMesh::ImplicitSystem::adjoint_qoi_parameter_sensitivity(), libMesh::DifferentiableSystem::adjoint_solve(), libMesh::ImplicitSystem::qoi_parameter_hessian(), and libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product().
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overridevirtualinherited |
Prepares matrix
and rhs
for system assembly, then calls user assembly function. Can be overridden in derived classes.
Reimplemented from libMesh::System.
Reimplemented in libMesh::LinearImplicitSystem, libMesh::DifferentiableSystem, libMesh::FrequencySystem, and libMesh::NewmarkSystem.
Definition at line 184 of file implicit_system.C.
References libMesh::System::assemble(), libMesh::SparseMatrix< T >::initialized(), libMesh::NumericVector< T >::initialized(), libMesh::ImplicitSystem::matrix, libMesh::ExplicitSystem::rhs, libMesh::SparseMatrix< T >::zero(), libMesh::NumericVector< T >::zero(), and libMesh::ImplicitSystem::zero_out_matrix_and_rhs.
Referenced by libMesh::LinearImplicitSystem::assemble().
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overridevirtualinherited |
Prepares qoi
for quantity of interest assembly, then calls user qoi function. Can be overridden in derived classes.
Reimplemented from libMesh::System.
Reimplemented in libMesh::FEMSystem.
Definition at line 56 of file explicit_system.C.
References libMesh::System::assemble_qoi(), libMesh::QoISet::has_index(), libMesh::System::n_qois(), and libMesh::System::qoi.
Referenced by libMesh::ImplicitSystem::adjoint_qoi_parameter_sensitivity(), libMesh::ImplicitSystem::forward_qoi_parameter_sensitivity(), libMesh::ImplicitSystem::qoi_parameter_hessian(), and libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product().
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overridevirtualinherited |
Prepares adjoint_rhs
for quantity of interest derivative assembly, then calls user qoi derivative function. Can be overridden in derived classes.
Reimplemented from libMesh::System.
Reimplemented in libMesh::FEMSystem.
Definition at line 69 of file explicit_system.C.
References libMesh::System::add_adjoint_rhs(), libMesh::System::assemble_qoi_derivative(), libMesh::QoISet::has_index(), libMesh::System::n_qois(), and libMesh::NumericVector< T >::zero().
Referenced by libMesh::ImplicitSystem::adjoint_solve(), libMesh::ImplicitSystem::forward_qoi_parameter_sensitivity(), libMesh::ImplicitSystem::qoi_parameter_hessian(), libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product(), and libMesh::ImplicitSystem::weighted_sensitivity_adjoint_solve().
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overridevirtualinherited |
Residual parameter derivative function.
Uses finite differences by default.
This will assemble the sensitivity rhs vectors to hold -(partial R / partial p_i), making them ready to solve the forward sensitivity equation.
Can be overridden in derived classes.
Reimplemented from libMesh::System.
Definition at line 654 of file implicit_system.C.
References std::abs(), libMesh::System::add_sensitivity_rhs(), libMesh::ImplicitSystem::assembly(), libMesh::NumericVector< T >::close(), std::max(), libMesh::Real, libMesh::ExplicitSystem::rhs, libMesh::ParameterVector::size(), and libMesh::TOLERANCE.
Referenced by libMesh::ImplicitSystem::adjoint_qoi_parameter_sensitivity(), and libMesh::ImplicitSystem::sensitivity_solve().
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overridevirtual |
Assembles a residual in rhs
and/or a jacobian in matrix
, as requested.
Reimplemented from libMesh::ImplicitSystem.
Definition at line 211 of file nonlinear_implicit_system.C.
References libMesh::System::current_local_solution, libMesh::ImplicitSystem::matrix, nonlinear_solver, libMesh::ExplicitSystem::rhs, and libMesh::System::update().
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inherited |
Register a user function to use in assembling the system matrix and RHS.
Definition at line 1777 of file system.C.
References libMesh::System::_assemble_system_function, libMesh::System::_assemble_system_object, and libMesh::out.
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inherited |
Register a user object to use in assembling the system matrix and RHS.
Definition at line 1796 of file system.C.
References libMesh::System::_assemble_system_function, libMesh::System::_assemble_system_object, and libMesh::out.
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inherited |
Register a user function for imposing constraints.
Definition at line 1812 of file system.C.
References libMesh::System::_constrain_system_function, libMesh::System::_constrain_system_object, and libMesh::out.
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inherited |
Register a user object for imposing constraints.
Definition at line 1831 of file system.C.
References libMesh::System::_constrain_system_function, libMesh::System::_constrain_system_object, and libMesh::out.
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inherited |
Register a user function to use in initializing the system.
Definition at line 1742 of file system.C.
References libMesh::System::_init_system_function, libMesh::System::_init_system_object, and libMesh::out.
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inherited |
Register a user class to use to initialize the system.
attach_init_function
. Definition at line 1761 of file system.C.
References libMesh::System::_init_system_function, libMesh::System::_init_system_object, and libMesh::out.
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inherited |
Register a user function for evaluating derivatives of a quantity of interest with respect to test functions, whose values should be placed in System::rhs
Definition at line 1883 of file system.C.
References libMesh::System::_qoi_evaluate_derivative_function, libMesh::System::_qoi_evaluate_derivative_object, and libMesh::out.
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inherited |
Register a user object for evaluating derivatives of a quantity of interest with respect to test functions, whose values should be placed in System::rhs
Definition at line 1902 of file system.C.
References libMesh::System::_qoi_evaluate_derivative_function, libMesh::System::_qoi_evaluate_derivative_object, and libMesh::out.
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inherited |
Register a user function for evaluating the quantities of interest, whose values should be placed in System::qoi
Definition at line 1847 of file system.C.
References libMesh::System::_qoi_evaluate_function, libMesh::System::_qoi_evaluate_object, and libMesh::out.
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inherited |
Register a user object for evaluating the quantities of interest, whose values should be placed in System::qoi
Definition at line 1867 of file system.C.
References libMesh::System::_qoi_evaluate_function, libMesh::System::_qoi_evaluate_object, and libMesh::out.
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inherited |
Projects arbitrary boundary functions onto a vector of degree of freedom values for the current system. Only degrees of freedom which affect the function's trace on a boundary in the set b
are affected. Only degrees of freedom associated with the variables listed in the vector variables
are projected. The function value f
and its gradient g
are user-provided cloneable functors. A gradient g
is only required/used for projecting onto finite element spaces with continuous derivatives. If non-default Parameters
are to be used, they can be provided in the parameters
argument.
This method projects an arbitrary boundary function onto the solution via L2 projections and nodal interpolations on each element.
Definition at line 985 of file system_projection.C.
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inherited |
Projects arbitrary boundary functions onto a vector of degree of freedom values for the current system. Only degrees of freedom which affect the function's trace on a boundary in the set b
are affected. Only degrees of freedom associated with the variables listed in the vector variables
are projected. The function value fptr
and its gradient gptr
are represented by function pointers. A gradient gptr
is only required/used for projecting onto finite element spaces with continuous derivatives.
This method projects components of an arbitrary boundary function onto the solution via L2 projections and nodal interpolations on each element.
Definition at line 968 of file system_projection.C.
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inherited |
Projects arbitrary boundary functions onto a vector of degree of freedom values for the current system. Only degrees of freedom which affect the function's trace on a boundary in the set b
are affected. Only degrees of freedom associated with the variables listed in the vector variables
are projected. The function value f
and its gradient g
are user-provided cloneable functors. A gradient g
is only required/used for projecting onto finite element spaces with continuous derivatives. If non-default Parameters
are to be used, they can be provided in the parameters
argument.
Constrain the new vector using the requested adjoint rather than primal constraints if is_adjoint is non-negative.
This method projects an arbitrary function via L2 projections and nodal interpolations on each element.
Definition at line 1021 of file system_projection.C.
References libMesh::NumericVector< T >::close(), and libMesh::Threads::parallel_for().
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inherited |
Projects arbitrary boundary functions onto a vector of degree of freedom values for the current system. Only degrees of freedom which affect the function's trace on a boundary in the set b
are affected. Only degrees of freedom associated with the variables listed in the vector variables
are projected. The function value fptr
and its gradient gptr
are represented by function pointers. A gradient gptr
is only required/used for projecting onto finite element spaces with continuous derivatives.
Constrain the new vector using the requested adjoint rather than primal constraints if is_adjoint is non-negative.
This method projects an arbitrary boundary function via L2 projections and nodal interpolations on each element.
Definition at line 1003 of file system_projection.C.
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inherited |
var
in the vector v
, in the specified norm (e.g. L2, L_INF, H1) Definition at line 1378 of file system.C.
References libMesh::DISCRETE_L1, libMesh::DISCRETE_L2, libMesh::DISCRETE_L_INF, libMesh::System::discrete_var_norm(), libMesh::L2, libMesh::System::n_vars(), and libMesh::Real.
Referenced by libMesh::AdaptiveTimeSolver::calculate_norm(), and libMesh::UnsteadySolver::du().
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v
, using component_norm
and component_scale
to choose and weight the norms of each variable. Definition at line 1400 of file system.C.
References libMesh::System::_dof_map, libMesh::System::_mesh, std::abs(), libMesh::TypeVector< T >::add_scaled(), libMesh::TypeTensor< T >::add_scaled(), libMesh::FEGenericBase< OutputType >::build(), libMesh::NumericVector< T >::build(), libMesh::ParallelObject::comm(), libMesh::FEType::default_quadrature_rule(), libMesh::DISCRETE_L1, libMesh::DISCRETE_L2, libMesh::DISCRETE_L_INF, libMesh::System::discrete_var_norm(), libMesh::DofMap::dof_indices(), libMesh::MeshBase::elem_dimensions(), libMesh::FEGenericBase< OutputType >::get_d2phi(), libMesh::System::get_dof_map(), libMesh::FEGenericBase< OutputType >::get_dphi(), libMesh::FEAbstract::get_JxW(), libMesh::System::get_mesh(), libMesh::FEGenericBase< OutputType >::get_phi(), libMesh::H1, libMesh::H1_SEMINORM, libMesh::H2, libMesh::H2_SEMINORM, libMesh::SystemNorm::is_discrete(), libMesh::L1, libMesh::NumericVector< T >::l1_norm(), libMesh::L2, libMesh::NumericVector< T >::l2_norm(), libMesh::L_INF, libMesh::NumericVector< T >::linfty_norm(), libMesh::NumericVector< T >::localize(), std::max(), libMesh::Parallel::Communicator::max(), libMesh::QBase::n_points(), libMesh::System::n_vars(), libMesh::TypeVector< T >::norm(), libMesh::TypeTensor< T >::norm(), libMesh::TensorTools::norm_sq(), libMesh::TypeVector< T >::norm_sq(), libMesh::TypeTensor< T >::norm_sq(), libMesh::Real, libMesh::FEAbstract::reinit(), libMesh::SERIAL, libMesh::NumericVector< T >::size(), libMesh::Parallel::Communicator::sum(), libMesh::SystemNorm::type(), libMesh::DofMap::variable_type(), libMesh::W1_INF_SEMINORM, libMesh::W2_INF_SEMINORM, libMesh::SystemNorm::weight(), and libMesh::SystemNorm::weight_sq().
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overridevirtual |
Clear all the data structures associated with the system.
Reimplemented from libMesh::ImplicitSystem.
Definition at line 70 of file nonlinear_implicit_system.C.
References libMesh::ImplicitSystem::clear(), and nonlinear_solver.
Referenced by ~NonlinearImplicitSystem().
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Parallel::Communicator
object used by this mesh. Definition at line 89 of file parallel_object.h.
References libMesh::ParallelObject::_communicator.
Referenced by libMesh::__libmesh_petsc_diff_solver_jacobian(), libMesh::__libmesh_petsc_diff_solver_monitor(), libMesh::__libmesh_petsc_diff_solver_residual(), libMesh::__libmesh_tao_equality_constraints(), libMesh::__libmesh_tao_equality_constraints_jacobian(), libMesh::__libmesh_tao_gradient(), libMesh::__libmesh_tao_hessian(), libMesh::__libmesh_tao_inequality_constraints(), libMesh::__libmesh_tao_inequality_constraints_jacobian(), libMesh::__libmesh_tao_objective(), libMesh::MeshRefinement::_coarsen_elements(), libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::SlepcEigenSolver< T >::_petsc_shell_matrix_get_diagonal(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_get_diagonal(), libMesh::SlepcEigenSolver< T >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_mult_add(), libMesh::EquationSystems::_read_impl(), libMesh::MeshRefinement::_refine_elements(), libMesh::MeshRefinement::_smooth_flags(), libMesh::PetscDMWrapper::add_dofs_helper(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::ImplicitSystem::add_matrix(), libMesh::System::add_vector(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::FEMSystem::assemble_qoi(), libMesh::MeshCommunication::assign_global_indices(), libMesh::DofMap::attach_matrix(), libMesh::MeshTools::Generation::build_extrusion(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::PetscDMWrapper::build_section(), libMesh::PetscDMWrapper::build_sf(), libMesh::MeshBase::cache_elem_dims(), libMesh::System::calculate_norm(), libMesh::DofMap::check_dirichlet_bcid_consistency(), libMesh::PetscDMWrapper::check_section_n_dofs(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Problem_Interface::computeF(), libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::MeshTools::create_bounding_box(), libMesh::MeshTools::create_nodal_bounding_box(), libMesh::MeshRefinement::create_parent_error_vector(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::MeshTools::create_subdomain_bounding_box(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), DMlibMeshFunction(), DMlibMeshJacobian(), DMlibMeshSetSystem_libMesh(), DMVariableBounds_libMesh(), libMesh::MeshRefinement::eliminate_unrefined_patches(), libMesh::EpetraVector< T >::EpetraVector(), libMesh::WeightedPatchRecoveryErrorEstimator::estimate_error(), libMesh::PatchRecoveryErrorEstimator::estimate_error(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::MeshRefinement::flag_elements_by_elem_fraction(), libMesh::MeshRefinement::flag_elements_by_error_fraction(), libMesh::MeshRefinement::flag_elements_by_nelem_target(), libMesh::CondensedEigenSystem::get_eigenpair(), libMesh::DofMap::get_info(), libMesh::ImplicitSystem::get_linear_solver(), libMesh::LocationMap< T >::init(), libMesh::TimeSolver::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::EigenSystem::init_data(), libMesh::EigenSystem::init_matrices(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_flags(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_p_levels(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::MeshTools::libmesh_assert_valid_unique_ids(), libMesh::libmesh_petsc_snes_fd_residual(), libMesh::libmesh_petsc_snes_jacobian(), libMesh::libmesh_petsc_snes_mffd_residual(), libMesh::libmesh_petsc_snes_postcheck(), libMesh::libmesh_petsc_snes_residual(), libMesh::libmesh_petsc_snes_residual_helper(), libMesh::MeshRefinement::limit_level_mismatch_at_edge(), libMesh::MeshRefinement::limit_level_mismatch_at_node(), libMesh::MeshRefinement::limit_overrefined_boundary(), libMesh::MeshRefinement::limit_underrefined_boundary(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshCommunication::make_elems_parallel_consistent(), libMesh::MeshRefinement::make_flags_parallel_consistent(), libMesh::MeshCommunication::make_new_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_new_nodes_parallel_consistent(), libMesh::MeshCommunication::make_node_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_unique_ids_parallel_consistent(), libMesh::MeshCommunication::make_nodes_parallel_consistent(), libMesh::MeshCommunication::make_p_levels_parallel_consistent(), libMesh::MeshRefinement::make_refinement_compatible(), libMesh::FEMSystem::mesh_position_set(), libMesh::DistributedMesh::n_active_elem(), libMesh::MeshTools::n_active_levels(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::CondensedEigenSystem::n_global_non_condensed_dofs(), libMesh::MeshTools::n_levels(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::MeshTools::n_p_levels(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::DistributedMesh::parallel_max_elem_id(), libMesh::DistributedMesh::parallel_max_node_id(), libMesh::ReplicatedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_n_elem(), libMesh::DistributedMesh::parallel_n_nodes(), libMesh::SparsityPattern::Build::parallel_sync(), libMesh::MeshTools::paranoid_n_levels(), libMesh::petsc_auto_fieldsplit(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::MeshBase::prepare_for_use(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::System::read_legacy_data(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::MeshBase::recalculate_n_partitions(), libMesh::MeshRefinement::refine_and_coarsen_elements(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::CheckpointIO::select_split_config(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::PetscDiffSolver::setup_petsc_data(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::split_mesh(), libMesh::MeshBase::subdomain_ids(), libMesh::BoundaryInfo::sync(), libMesh::MeshRefinement::test_level_one(), libMesh::MeshRefinement::test_unflagged(), libMesh::MeshTools::total_weight(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().
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true
when the other system contains identical data, up to the given threshold. Outputs some diagnostic info when verbose
is set. Definition at line 514 of file system.C.
References libMesh::System::_is_initialized, libMesh::System::_sys_name, libMesh::System::_vectors, libMesh::System::get_vector(), libMesh::System::n_vectors(), libMesh::System::name(), libMesh::out, and libMesh::System::solution.
Referenced by libMesh::EquationSystems::compare().
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inherited |
Definition at line 194 of file system.C.
References libMesh::System::_dof_map, and libMesh::System::current_local_solution.
Referenced by libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::HPCoarsenTest::add_projection(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::WeightedPatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::PatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::HPCoarsenTest::select_refinement(), libMesh::EnsightIO::write_scalar_ascii(), and libMesh::EnsightIO::write_vector_ascii().
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inlineinherited |
Deactivates the system. Only active systems are solved.
Definition at line 2081 of file system.h.
References libMesh::System::_active.
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overridevirtualinherited |
Avoids use of any cached data that might affect any solve result. Should be overridden in derived systems.
Reimplemented from libMesh::System.
Definition at line 306 of file implicit_system.C.
References libMesh::System::assemble_before_solve, libMesh::ImplicitSystem::get_linear_solver(), and libMesh::LinearSolver< T >::reuse_preconditioner().
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staticinherited |
Definition at line 106 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter.
Referenced by libMesh::LibMeshInit::LibMeshInit().
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staticinherited |
Methods to enable/disable the reference counter output from print_info()
Definition at line 100 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter.
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inline |
Definition at line 278 of file nonlinear_implicit_system.h.
References _final_nonlinear_residual.
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overridevirtualinherited |
Solves for the derivative of each of the system's quantities of interest q in qoi
[qoi_indices] with respect to each parameter in parameters
, placing the result for qoi i
and parameter j
into sensitivities
[i][j].
Uses the forward sensitivity method.
Currently uses finite differenced derivatives (partial q / partial p) and (partial R / partial p).
Reimplemented from libMesh::System.
Definition at line 807 of file implicit_system.C.
References std::abs(), libMesh::SensitivityData::allocate_data(), libMesh::ExplicitSystem::assemble_qoi(), libMesh::ExplicitSystem::assemble_qoi_derivative(), libMesh::ImplicitSystem::assembly(), libMesh::NumericVector< T >::close(), libMesh::SparseMatrix< T >::close(), libMesh::NumericVector< T >::dot(), libMesh::System::get_adjoint_rhs(), libMesh::System::get_sensitivity_solution(), libMesh::QoISet::has_index(), libMesh::ImplicitSystem::matrix, std::max(), libMesh::System::n_qois(), libMesh::System::qoi, libMesh::Real, libMesh::ExplicitSystem::rhs, libMesh::ImplicitSystem::sensitivity_solve(), libMesh::ParameterVector::size(), and libMesh::TOLERANCE.
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inherited |
Definition at line 1031 of file system.C.
References libMesh::System::get_vector().
Referenced by libMesh::ImplicitSystem::adjoint_solve(), libMesh::ImplicitSystem::forward_qoi_parameter_sensitivity(), libMesh::ImplicitSystem::qoi_parameter_hessian(), libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product(), and libMesh::ImplicitSystem::weighted_sensitivity_adjoint_solve().
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inherited |
Definition at line 1041 of file system.C.
References libMesh::System::get_vector().
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inherited |
Definition at line 969 of file system.C.
References libMesh::System::get_vector().
Referenced by libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::ImplicitSystem::adjoint_solve(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::AdjointResidualErrorEstimator::estimate_error(), libMesh::ImplicitSystem::qoi_parameter_hessian(), libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product(), and libMesh::ImplicitSystem::weighted_sensitivity_adjoint_solve().
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inherited |
Definition at line 979 of file system.C.
References libMesh::System::get_vector().
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inherited |
Fills all_variable_numbers
with all the variable numbers for the variables that have been added to this system.
Definition at line 1258 of file system.C.
References libMesh::System::_variable_numbers, and libMesh::System::n_vars().
unsigned libMesh::NonlinearImplicitSystem::get_current_nonlinear_iteration_number | ( | ) | const |
If called during the solve(), for example by the user-specified residual or Jacobian function, return the current nonlinear iteration number.
Definition at line 282 of file nonlinear_implicit_system.C.
References nonlinear_solver.
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inlineinherited |
_dof_map
. Definition at line 2049 of file system.h.
References libMesh::System::_dof_map.
Referenced by libMesh::__libmesh_petsc_diff_solver_jacobian(), libMesh::__libmesh_petsc_diff_solver_residual(), libMesh::ExactSolution::_compute_error(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::DifferentiableSystem::add_dot_var_dirichlet_bcs(), libMesh::HPCoarsenTest::add_projection(), libMesh::UnsteadySolver::adjoint_advance_timestep(), libMesh::ImplicitSystem::adjoint_solve(), libMesh::NewmarkSolver::advance_timestep(), libMesh::UnsteadySolver::advance_timestep(), libMesh::EquationSystems::allgather(), libMesh::EquationSystems::build_discontinuous_solution_vector(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::PetscDMWrapper::build_sf(), libMesh::System::calculate_norm(), libMesh::Problem_Interface::computeF(), libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), DMCreateDomainDecomposition_libMesh(), DMCreateFieldDecomposition_libMesh(), DMlibMeshFunction(), DMlibMeshJacobian(), DMlibMeshSetSystem_libMesh(), libMesh::DofMap::enforce_constraints_exactly(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::System::get_info(), libMesh::SystemSubsetBySubdomain::init(), libMesh::SecondOrderUnsteadySolver::init_data(), libMesh::UnsteadySolver::init_data(), libMesh::EigenSystem::init_matrices(), libMesh::ImplicitSystem::init_matrices(), libMesh::CondensedEigenSystem::initialize_condensed_dofs(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::libmesh_petsc_snes_jacobian(), libMesh::libmesh_petsc_snes_postcheck(), libMesh::libmesh_petsc_snes_residual_helper(), libMesh::System::local_dof_indices(), libMesh::DofMap::max_constraint_error(), libMesh::DGFEMContext::neighbor_side_fe_reinit(), libMesh::UnsteadySolver::old_nonlinear_solution(), libMesh::SecondOrderUnsteadySolver::old_solution_accel(), libMesh::SecondOrderUnsteadySolver::old_solution_rate(), libMesh::WeightedPatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::PatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::petsc_auto_fieldsplit(), libMesh::ErrorVector::plot_error(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::FEMContext::pre_fe_reinit(), libMesh::System::re_update(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::SecondOrderUnsteadySolver::reinit(), libMesh::UnsteadySolver::reinit(), libMesh::EigenSystem::reinit(), libMesh::ImplicitSystem::reinit(), libMesh::System::reinit_constraints(), libMesh::EquationSystems::reinit_solutions(), libMesh::UnsteadySolver::retrieve_timestep(), libMesh::HPCoarsenTest::select_refinement(), libMesh::ImplicitSystem::sensitivity_solve(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::NewtonSolver::solve(), libMesh::PetscDiffSolver::solve(), libMesh::ImplicitSystem::weighted_sensitivity_adjoint_solve(), libMesh::ImplicitSystem::weighted_sensitivity_solve(), libMesh::System::write_parallel_data(), libMesh::EnsightIO::write_scalar_ascii(), libMesh::System::write_SCALAR_dofs(), and libMesh::EnsightIO::write_vector_ascii().
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inlineinherited |
_dof_map
. Definition at line 2057 of file system.h.
References libMesh::System::_dof_map.
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inlineinherited |
Definition at line 712 of file system.h.
References libMesh::System::_equation_systems.
Referenced by libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::NewmarkSystem::clear(), libMesh::FrequencySystem::clear_all(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::AdjointResidualErrorEstimator::estimate_error(), libMesh::ExactErrorEstimator::find_squared_element_error(), libMesh::ImplicitSystem::get_linear_solve_parameters(), libMesh::FrequencySystem::init_data(), libMesh::FrequencySystem::n_frequencies(), libMesh::System::point_value(), libMesh::FrequencySystem::set_current_frequency(), libMesh::FrequencySystem::set_frequencies(), libMesh::FrequencySystem::set_frequencies_by_range(), libMesh::FrequencySystem::set_frequencies_by_steps(), libMesh::NewmarkSystem::set_newmark_parameters(), set_solver_parameters(), libMesh::CondensedEigenSystem::solve(), libMesh::EigenSystem::solve(), libMesh::FrequencySystem::solve(), libMesh::LinearImplicitSystem::solve(), and libMesh::WrappedFunction< Output >::WrappedFunction().
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inlineinherited |
Definition at line 717 of file system.h.
References libMesh::System::_equation_systems.
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staticinherited |
Gets a string containing the reference information.
Definition at line 47 of file reference_counter.C.
References libMesh::ReferenceCounter::_counts, and libMesh::Quality::name().
Referenced by libMesh::ReferenceCounter::print_info().
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inherited |
Definition at line 1658 of file system.C.
References libMesh::FEType::family, libMesh::System::get_dof_map(), libMesh::DofMap::get_info(), libMesh::FEType::inf_map, libMesh::System::n_constrained_dofs(), libMesh::System::n_dofs(), libMesh::System::n_local_constrained_dofs(), libMesh::System::n_local_dofs(), libMesh::System::n_matrices(), libMesh::System::n_variable_groups(), libMesh::VariableGroup::n_variables(), libMesh::System::n_vectors(), libMesh::VariableGroup::name(), libMesh::System::name(), libMesh::System::number(), libMesh::FEType::order, libMesh::FEType::radial_family, libMesh::FEType::radial_order, libMesh::System::system_type(), libMesh::Variable::type(), libMesh::DofMap::variable_group(), and libMesh::System::variable_group().
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overridevirtual |
Reimplemented from libMesh::ImplicitSystem.
Definition at line 200 of file nonlinear_implicit_system.C.
References diff_solver, and nonlinear_solver.
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virtualinherited |
This function must be overridden in derived classes, since this base class does not have a valid LinearSolver to hand back a pointer to.
Reimplemented in libMesh::LinearImplicitSystem, and libMesh::DifferentiableSystem.
Definition at line 1395 of file implicit_system.C.
References libMesh::LinearSolver< T >::build(), libMesh::ParallelObject::comm(), libMesh::LinearSolver< T >::init(), libMesh::System::name(), and libMesh::on_command_line().
Referenced by libMesh::ImplicitSystem::adjoint_solve(), libMesh::ImplicitSystem::disable_cache(), libMesh::ImplicitSystem::sensitivity_solve(), libMesh::ImplicitSystem::weighted_sensitivity_adjoint_solve(), and libMesh::ImplicitSystem::weighted_sensitivity_solve().
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mat_name
.None of these matrices is involved in the solution process. Access is only granted when the matrix is already properly initialized.
Definition at line 263 of file implicit_system.C.
References libMesh::ImplicitSystem::_matrices.
Referenced by libMesh::NewmarkSystem::compute_matrix(), libMesh::EigenTimeSolver::solve(), and libMesh::NewmarkSystem::update_rhs().
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mat_name
.None of these matrices is involved in the solution process. Access is only granted when the matrix is already properly initialized.
Definition at line 276 of file implicit_system.C.
References libMesh::ImplicitSystem::_matrices.
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_mesh
. Definition at line 2033 of file system.h.
References libMesh::System::_mesh.
Referenced by libMesh::ExactSolution::_compute_error(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::HPCoarsenTest::add_projection(), libMesh::FEMSystem::assemble_qoi(), libMesh::FEMSystem::assemble_qoi_derivative(), libMesh::FEMSystem::assembly(), libMesh::System::calculate_norm(), DMCreateDomainDecomposition_libMesh(), DMCreateFieldDecomposition_libMesh(), DMlibMeshSetSystem_libMesh(), libMesh::WeightedPatchRecoveryErrorEstimator::estimate_error(), libMesh::PatchRecoveryErrorEstimator::estimate_error(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::AdjointResidualErrorEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::SystemSubsetBySubdomain::init(), libMesh::System::init_data(), libMesh::EigenSystem::init_matrices(), libMesh::ImplicitSystem::init_matrices(), libMesh::System::local_dof_indices(), libMesh::DofMap::max_constraint_error(), libMesh::FEMSystem::mesh_position_get(), libMesh::FEMSystem::mesh_position_set(), libMesh::WeightedPatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::PatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::petsc_auto_fieldsplit(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::FEMSystem::postprocess(), libMesh::System::read_header(), libMesh::System::read_legacy_data(), libMesh::System::read_parallel_data(), libMesh::System::read_serialized_vector(), libMesh::System::read_serialized_vectors(), libMesh::EigenSystem::reinit(), libMesh::ImplicitSystem::reinit(), libMesh::HPSingularity::select_refinement(), libMesh::HPCoarsenTest::select_refinement(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::System::write_header(), libMesh::System::write_parallel_data(), libMesh::System::write_serialized_vector(), libMesh::System::write_serialized_vectors(), and libMesh::System::zero_variable().
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_mesh
. Definition at line 2041 of file system.h.
References libMesh::System::_mesh.
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inherited |
assemble_residual_derivatives()
is called.When assembled, this vector should hold -(partial R / partial p_i)
Definition at line 1061 of file system.C.
References libMesh::System::get_vector().
Referenced by libMesh::ImplicitSystem::adjoint_qoi_parameter_sensitivity(), and libMesh::ImplicitSystem::sensitivity_solve().
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inherited |
Definition at line 1071 of file system.C.
References libMesh::System::get_vector().
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inherited |
Definition at line 916 of file system.C.
References libMesh::System::get_vector().
Referenced by libMesh::ImplicitSystem::forward_qoi_parameter_sensitivity(), libMesh::ImplicitSystem::qoi_parameter_hessian(), and libMesh::ImplicitSystem::sensitivity_solve().
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inherited |
Definition at line 926 of file system.C.
References libMesh::System::get_vector().
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vec_name
. Access is only granted when the vector is already properly initialized. Definition at line 774 of file system.C.
References libMesh::System::_vectors.
Referenced by libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::UnsteadySolver::adjoint_advance_timestep(), libMesh::NewmarkSolver::advance_timestep(), libMesh::AdaptiveTimeSolver::advance_timestep(), libMesh::UnsteadySolver::advance_timestep(), libMesh::System::compare(), libMesh::NewmarkSolver::compute_initial_accel(), libMesh::UnsteadySolver::du(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::System::get_adjoint_rhs(), libMesh::System::get_adjoint_solution(), libMesh::System::get_sensitivity_rhs(), libMesh::System::get_sensitivity_solution(), libMesh::System::get_weighted_sensitivity_adjoint_solution(), libMesh::System::get_weighted_sensitivity_solution(), libMesh::NewmarkSystem::initial_conditions(), libMesh::NewmarkSolver::project_initial_accel(), libMesh::SecondOrderUnsteadySolver::project_initial_rate(), libMesh::SecondOrderUnsteadySolver::reinit(), libMesh::UnsteadySolver::reinit(), libMesh::MemorySolutionHistory::retrieve(), libMesh::UnsteadySolver::retrieve_timestep(), libMesh::TwostepTimeSolver::solve(), libMesh::FrequencySystem::solve(), libMesh::NewmarkSystem::update_rhs(), and libMesh::NewmarkSystem::update_u_v_a().
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vec_name
. Access is only granted when the vector is already properly initialized. Definition at line 787 of file system.C.
References libMesh::System::_vectors.
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vec_num
(where the vectors are counted starting with 0). Definition at line 800 of file system.C.
References libMesh::System::vectors_begin(), and libMesh::System::vectors_end().
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vec_num
(where the vectors are counted starting with 0). Definition at line 816 of file system.C.
References libMesh::System::vectors_begin(), and libMesh::System::vectors_end().
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inherited |
Definition at line 1001 of file system.C.
References libMesh::System::get_vector().
Referenced by libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product(), and libMesh::ImplicitSystem::weighted_sensitivity_adjoint_solve().
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inherited |
Definition at line 1011 of file system.C.
References libMesh::System::get_vector().
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inherited |
Definition at line 943 of file system.C.
References libMesh::System::get_vector().
Referenced by libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product(), and libMesh::ImplicitSystem::weighted_sensitivity_solve().
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inherited |
Definition at line 950 of file system.C.
References libMesh::System::get_vector().
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true
if a variable named var
exists in this System Definition at line 1236 of file system.C.
References libMesh::System::_variable_numbers.
Referenced by libMesh::GMVIO::copy_nodal_solution().
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inlineinherited |
true
if this System
has a matrix associated with the given name, false
otherwise. Definition at line 419 of file implicit_system.h.
References libMesh::ImplicitSystem::_matrices.
Referenced by libMesh::ImplicitSystem::add_matrix(), and libMesh::EigenTimeSolver::init().
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inlineinherited |
true
if this System
has a vector associated with the given name, false
otherwise. Definition at line 2225 of file system.h.
References libMesh::System::_vectors.
Referenced by libMesh::System::add_vector().
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inlineinherited |
true
, then EquationSystems::write
will ignore this system. Definition at line 1662 of file system.h.
References libMesh::System::_hide_output.
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inlineinherited |
true
when VariableGroup
structures should be automatically identified, false
otherwise. Definition at line 2201 of file system.h.
References libMesh::System::_identify_variable_groups.
Referenced by libMesh::System::add_variable().
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inlineinherited |
Toggle automatic VariableGroup
identification.
Definition at line 2209 of file system.h.
References libMesh::System::_identify_variable_groups.
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inlineprotectedinherited |
Increments the construction counter. Should be called in the constructor of any derived class that will be reference counted.
Definition at line 181 of file reference_counter.h.
References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.
Referenced by libMesh::ReferenceCountedObject< RBParametrized >::ReferenceCountedObject().
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inlineprotectedinherited |
Increments the destruction counter. Should be called in the destructor of any derived class that will be reference counted.
Definition at line 194 of file reference_counter.h.
References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.
Referenced by libMesh::ReferenceCountedObject< RBParametrized >::~ReferenceCountedObject().
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inherited |
Initializes degrees of freedom on the current mesh. Sets the
Definition at line 237 of file system.C.
References libMesh::System::_basic_system_only, libMesh::System::init_data(), libMesh::System::is_initialized(), libMesh::System::n_vars(), and libMesh::System::user_initialization().
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overrideprotectedvirtualinherited |
Initializes the member data fields associated with the system, so that, e.g., assemble()
may be used.
Reimplemented from libMesh::System.
Reimplemented in libMesh::DifferentiableSystem, libMesh::ContinuationSystem, libMesh::RBEIMConstruction, libMesh::FEMSystem, libMesh::OptimizationSystem, libMesh::FrequencySystem, libMesh::RBConstructionBase< LinearImplicitSystem >, and libMesh::LinearImplicitSystem.
Definition at line 91 of file implicit_system.C.
References libMesh::ImplicitSystem::_matrices, libMesh::System::init_data(), and libMesh::ImplicitSystem::init_matrices().
Referenced by libMesh::LinearImplicitSystem::init_data(), libMesh::OptimizationSystem::init_data(), and libMesh::DifferentiableSystem::init_data().
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protectedvirtualinherited |
Initializes the matrices associated with this system.
Definition at line 106 of file implicit_system.C.
References libMesh::ImplicitSystem::_can_add_matrices, libMesh::ImplicitSystem::_matrices, libMesh::DofMap::attach_matrix(), libMesh::DofMap::compute_sparsity(), libMesh::System::get_dof_map(), libMesh::System::get_mesh(), libMesh::SparseMatrix< T >::initialized(), libMesh::DofMap::is_attached(), and libMesh::ImplicitSystem::matrix.
Referenced by libMesh::ImplicitSystem::init_data().
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inlineinherited |
Accessor for the adjoint_already_solved boolean
Definition at line 388 of file system.h.
References libMesh::System::adjoint_already_solved.
Referenced by libMesh::ImplicitSystem::adjoint_qoi_parameter_sensitivity(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::AdjointResidualErrorEstimator::estimate_error(), libMesh::ImplicitSystem::qoi_parameter_hessian(), and libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product().
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inlineinherited |
true
iff this system has been initialized. Definition at line 2089 of file system.h.
References libMesh::System::_is_initialized.
Referenced by libMesh::System::add_variable(), libMesh::System::add_variables(), and libMesh::System::init().
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inherited |
Fills the std::set with the degrees of freedom on the local processor corresponding the the variable number passed in.
Definition at line 1277 of file system.C.
References libMesh::DofMap::dof_indices(), libMesh::DofMap::end_dof(), libMesh::DofMap::first_dof(), libMesh::System::get_dof_map(), and libMesh::System::get_mesh().
Referenced by libMesh::System::discrete_var_norm().
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inlineinherited |
Definition at line 2217 of file system.h.
References libMesh::System::n_constrained_dofs(), and libMesh::System::n_dofs().
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inlineinherited |
n_vars()
in the case of all scalar-valued variables. Definition at line 2121 of file system.h.
References libMesh::System::_variables, libMesh::Variable::first_scalar_number(), and libMesh::Variable::n_components().
Referenced by libMesh::System::add_variables().
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Definition at line 157 of file system.C.
References libMesh::System::_dof_map.
Referenced by libMesh::System::get_info(), and libMesh::System::n_active_dofs().
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inherited |
Definition at line 150 of file system.C.
References libMesh::System::_dof_map.
Referenced by libMesh::System::add_vector(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::System::get_info(), libMesh::SecondOrderUnsteadySolver::init_data(), libMesh::UnsteadySolver::init_data(), libMesh::System::init_data(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::System::n_active_dofs(), libMesh::CondensedEigenSystem::n_global_non_condensed_dofs(), libMesh::FEMSystem::numerical_jacobian(), libMesh::System::read_legacy_data(), libMesh::SecondOrderUnsteadySolver::reinit(), libMesh::UnsteadySolver::reinit(), and libMesh::System::restrict_vectors().
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Definition at line 172 of file system.C.
References libMesh::System::_dof_map.
Referenced by libMesh::System::get_info().
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Definition at line 187 of file system.C.
References libMesh::System::_dof_map, and libMesh::ParallelObject::processor_id().
Referenced by libMesh::System::add_vector(), libMesh::PetscDMWrapper::build_section(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::System::get_info(), libMesh::SecondOrderUnsteadySolver::init_data(), libMesh::UnsteadySolver::init_data(), libMesh::System::init_data(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::SecondOrderUnsteadySolver::reinit(), libMesh::UnsteadySolver::reinit(), and libMesh::System::restrict_vectors().
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inlineoverridevirtualinherited |
Reimplemented from libMesh::System.
Definition at line 426 of file implicit_system.h.
References libMesh::ImplicitSystem::_matrices.
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inline |
Definition at line 273 of file nonlinear_implicit_system.h.
References _n_nonlinear_iterations.
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inlinestaticinherited |
Prints the number of outstanding (created, but not yet destroyed) objects.
Definition at line 83 of file reference_counter.h.
References libMesh::ReferenceCounter::_n_objects.
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inlineinherited |
Definition at line 95 of file parallel_object.h.
References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::size().
Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::DistributedMesh::add_node(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::FEMSystem::assembly(), libMesh::AztecLinearSolver< T >::AztecLinearSolver(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::UnstructuredMesh::create_pid_mesh(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::EnsightIO::EnsightIO(), libMesh::MeshBase::get_info(), libMesh::SystemSubsetBySubdomain::init(), libMesh::PetscDMWrapper::init_and_attach_petscdm(), libMesh::Nemesis_IO_Helper::initialize(), libMesh::DistributedMesh::insert_elem(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_new_node_procids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::DofMap::local_variable_indices(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshBase::n_active_elem_on_proc(), libMesh::MeshBase::n_elem_on_proc(), libMesh::MeshBase::n_nodes_on_proc(), libMesh::MeshBase::partition(), libMesh::PetscLinearSolver< T >::PetscLinearSolver(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::CheckpointIO::read_connectivity(), libMesh::XdrIO::read_header(), libMesh::CheckpointIO::read_nodes(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::System::read_serialized_vector(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::GMVIO::write_binary(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::System::write_parallel_data(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().
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inlineinherited |
Number of currently active quantities of interest.
Definition at line 2278 of file system.h.
References libMesh::System::qoi.
Referenced by libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::ImplicitSystem::adjoint_qoi_parameter_sensitivity(), libMesh::ImplicitSystem::adjoint_solve(), libMesh::SensitivityData::allocate_data(), libMesh::SensitivityData::allocate_hessian_data(), libMesh::ExplicitSystem::assemble_qoi(), libMesh::FEMSystem::assemble_qoi(), libMesh::ExplicitSystem::assemble_qoi_derivative(), libMesh::FEMSystem::assemble_qoi_derivative(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::AdjointResidualErrorEstimator::estimate_error(), libMesh::ImplicitSystem::forward_qoi_parameter_sensitivity(), libMesh::FEMContext::pre_fe_reinit(), libMesh::ImplicitSystem::qoi_parameter_hessian(), libMesh::ImplicitSystem::qoi_parameter_hessian_vector_product(), libMesh::QoISet::size(), and libMesh::ImplicitSystem::weighted_sensitivity_adjoint_solve().
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inlineinherited |
VariableGroup
variable groups in the system Definition at line 2113 of file system.h.
References libMesh::System::_variable_groups.
Referenced by libMesh::System::add_variable(), libMesh::FEMSystem::assembly(), libMesh::System::get_info(), and libMesh::System::init_data().
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inlineinherited |
Definition at line 2105 of file system.h.
References libMesh::System::_variables.
Referenced by libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::PetscDMWrapper::add_dofs_helper(), libMesh::DiffContext::add_localized_vector(), libMesh::System::add_variable(), libMesh::System::add_variables(), libMesh::EquationSystems::build_discontinuous_solution_vector(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::PetscDMWrapper::build_section(), libMesh::System::calculate_norm(), libMesh::DGFEMContext::DGFEMContext(), libMesh::DiffContext::DiffContext(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::AdjointResidualErrorEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::ErrorEstimator::estimate_errors(), libMesh::ExactSolution::ExactSolution(), libMesh::System::get_all_variable_numbers(), libMesh::System::init(), libMesh::FEMSystem::init_context(), libMesh::FEMContext::init_internal_data(), libMesh::DGFEMContext::neighbor_side_fe_reinit(), libMesh::WeightedPatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::PatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::petsc_auto_fieldsplit(), libMesh::FEMContext::pre_fe_reinit(), libMesh::System::re_update(), libMesh::System::read_legacy_data(), libMesh::System::read_parallel_data(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::System::read_serialized_vector(), libMesh::System::read_serialized_vectors(), libMesh::HPCoarsenTest::select_refinement(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::SystemSubsetBySubdomain::set_var_nums(), libMesh::System::write_header(), libMesh::System::write_parallel_data(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::System::write_serialized_vector(), libMesh::System::write_serialized_vectors(), and libMesh::System::zero_variable().
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inlineinherited |
_vectors
map Definition at line 2233 of file system.h.
References libMesh::System::_vectors.
Referenced by libMesh::ExplicitSystem::add_system_rhs(), libMesh::System::compare(), libMesh::System::get_info(), and libMesh::System::write_header().
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inlineinherited |
Definition at line 2017 of file system.h.
References libMesh::System::_sys_name.
Referenced by libMesh::System::compare(), libMesh::ContinuationSystem::ContinuationSystem(), DMlibMeshSetUpName_Private(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::ExactSolution::ExactSolution(), libMesh::ExactErrorEstimator::find_squared_element_error(), libMesh::System::get_info(), libMesh::ImplicitSystem::get_linear_solver(), libMesh::NewtonSolver::init(), libMesh::TimeSolver::init_data(), libMesh::petsc_auto_fieldsplit(), libMesh::TimeSolver::reinit(), libMesh::PetscDiffSolver::setup_petsc_data(), libMesh::FrequencySystem::solve(), libMesh::LinearImplicitSystem::solve(), solve(), libMesh::System::user_assembly(), libMesh::System::user_constrain(), libMesh::System::user_initialization(), libMesh::System::user_QOI(), libMesh::System::user_QOI_derivative(), libMesh::System::write_header(), libMesh::System::write_parallel_data(), and libMesh::System::write_serialized_data().
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Definition at line 2025 of file system.h.
References libMesh::System::_sys_number.
Referenced by libMesh::ExactSolution::_compute_error(), libMesh::PetscDMWrapper::add_dofs_helper(), libMesh::System::add_variable(), libMesh::System::add_variables(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::ExodusII_IO::copy_nodal_solution(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::find_squared_element_error(), libMesh::System::get_info(), libMesh::System::read_legacy_data(), libMesh::System::read_parallel_data(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::HPCoarsenTest::select_refinement(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::System::write_parallel_data(), libMesh::System::write_serialized_blocked_dof_objects(), and libMesh::System::zero_variable().
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var
at the physical point p
in the mesh, similarly to point_value. Definition at line 2100 of file system.C.
References libMesh::Parallel::Communicator::broadcast(), libMesh::ParallelObject::comm(), libMesh::PointLocatorBase::enable_out_of_mesh_mode(), libMesh::System::get_dof_map(), libMesh::System::get_mesh(), mesh, libMesh::Parallel::Communicator::min(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::processor_id(), and libMesh::DofObject::processor_id().
Referenced by libMesh::System::point_gradient().
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var
at the physical point p
in local Elem e
in the mesh, similarly to point_value. Definition at line 2154 of file system.C.
References libMesh::TypeVector< T >::add_scaled(), libMesh::FEGenericBase< OutputType >::build(), libMesh::Elem::contains_point(), libMesh::System::current_solution(), libMesh::Elem::dim(), libMesh::DofMap::dof_indices(), libMesh::System::get_dof_map(), libMesh::Elem::infinite(), libMesh::FEInterface::inverse_map(), libMesh::DofMap::is_evaluable(), and libMesh::DofMap::variable_type().
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Calls the version of point_gradient() which takes a reference. This function exists only to prevent people from calling the version of point_gradient() that has a boolean third argument, which would result in unnecessary PointLocator calls.
Definition at line 2210 of file system.C.
References libMesh::System::point_gradient().
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var
at the physical point p
in the mesh, similarly to point_value. Definition at line 2220 of file system.C.
References libMesh::Parallel::Communicator::broadcast(), libMesh::ParallelObject::comm(), libMesh::PointLocatorBase::enable_out_of_mesh_mode(), libMesh::System::get_dof_map(), libMesh::System::get_mesh(), mesh, libMesh::Parallel::Communicator::min(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::processor_id(), and libMesh::DofObject::processor_id().
Referenced by libMesh::System::point_hessian().
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var
at the physical point p
in local Elem e
in the mesh, similarly to point_value. Definition at line 2273 of file system.C.
References libMesh::TypeTensor< T >::add_scaled(), libMesh::FEGenericBase< OutputType >::build(), libMesh::Elem::contains_point(), libMesh::System::current_solution(), libMesh::Elem::dim(), libMesh::DofMap::dof_indices(), libMesh::System::get_dof_map(), libMesh::Elem::infinite(), libMesh::FEInterface::inverse_map(), libMesh::DofMap::is_evaluable(), and libMesh::DofMap::variable_type().
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Calls the version of point_hessian() which takes a reference. This function exists only to prevent people from calling the version of point_hessian() that has a boolean third argument, which would result in unnecessary PointLocator calls.
Definition at line 2329 of file system.C.
References libMesh::System::point_hessian().
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var
at the physical point p
in the mesh, without knowing a priori which element contains p
.MeshBase::sub_point_locator()
; users may or may not want to call MeshBase::clear_point_locator()
afterward. Also, point_locator() is expensive (N log N for initial construction, log N for evaluations). Avoid using this function in any context where you are already looping over elements.Because the element containing p
may lie on any processor, this function is parallel-only.
By default this method expects the point to reside inside the domain and will abort if no element can be found which contains p
. The optional parameter insist_on_success
can be set to false to allow the method to return 0 when the point is not located.
Definition at line 1993 of file system.C.
References libMesh::Parallel::Communicator::broadcast(), libMesh::ParallelObject::comm(), libMesh::PointLocatorBase::enable_out_of_mesh_mode(), libMesh::System::get_dof_map(), libMesh::System::get_mesh(), mesh, libMesh::Parallel::Communicator::min(), libMesh::ParallelObject::n_processors(), libMesh::ParallelObject::processor_id(), and libMesh::DofObject::processor_id().
Referenced by libMesh::System::point_value().
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var
at the physical point p
contained in local Elem e
This version of point_value can be run in serial, but assumes e
is in the local mesh partition or is algebraically ghosted.
Definition at line 2046 of file system.C.
References libMesh::FEInterface::compute_data(), libMesh::Elem::contains_point(), libMesh::System::current_solution(), libMesh::Elem::dim(), libMesh::System::get_dof_map(), libMesh::System::get_equation_systems(), and libMesh::FEInterface::inverse_map().
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Calls the version of point_value() which takes a reference. This function exists only to prevent people from calling the version of point_value() that has a boolean third argument, which would result in unnecessary PointLocator calls.
Definition at line 2092 of file system.C.
References libMesh::System::point_value().
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Prints the reference information, by default to libMesh::out
.
Definition at line 87 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter, and libMesh::ReferenceCounter::get_info().
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Definition at line 101 of file parallel_object.h.
References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::rank().
Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::EquationSystems::_read_impl(), libMesh::PetscDMWrapper::add_dofs_to_section(), libMesh::DistributedMesh::add_elem(), libMesh::BoundaryInfo::add_elements(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::FEMSystem::assembly(), libMesh::EquationSystems::build_discontinuous_solution_vector(), libMesh::Nemesis_IO_Helper::build_element_and_node_maps(), libMesh::InfElemBuilder::build_inf_elem(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_elemental_solution_vector(), libMesh::DistributedMesh::clear(), libMesh::ExodusII_IO_Helper::close(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::compute_communication_map_parameters(), libMesh::Nemesis_IO_Helper::compute_internal_and_border_elems_and_internal_nodes(), libMesh::Nemesis_IO_Helper::compute_node_communication_maps(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::ExodusII_IO_Helper::create(), libMesh::DistributedMesh::delete_elem(), libMesh::DistributedMesh::delete_node(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::DistributedMesh::DistributedMesh(), libMesh::DofMap::end_dof(), libMesh::DofMap::end_old_dof(), libMesh::EnsightIO::EnsightIO(), libMesh::MeshFunction::find_element(), libMesh::MeshFunction::find_elements(), libMesh::UnstructuredMesh::find_neighbors(), libMesh::DofMap::first_dof(), libMesh::DofMap::first_old_dof(), libMesh::Nemesis_IO_Helper::get_cmap_params(), libMesh::Nemesis_IO_Helper::get_eb_info_global(), libMesh::Nemesis_IO_Helper::get_elem_cmap(), libMesh::Nemesis_IO_Helper::get_elem_map(), libMesh::MeshBase::get_info(), libMesh::DofMap::get_info(), libMesh::Nemesis_IO_Helper::get_init_global(), libMesh::Nemesis_IO_Helper::get_init_info(), libMesh::Nemesis_IO_Helper::get_loadbal_param(), libMesh::Nemesis_IO_Helper::get_node_cmap(), libMesh::Nemesis_IO_Helper::get_node_map(), libMesh::Nemesis_IO_Helper::get_ns_param_global(), libMesh::Nemesis_IO_Helper::get_ss_param_global(), libMesh::SparsityPattern::Build::handle_vi_vj(), libMesh::SystemSubsetBySubdomain::init(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::ExodusII_IO_Helper::initialize_element_variables(), libMesh::ExodusII_IO_Helper::initialize_global_variables(), libMesh::ExodusII_IO_Helper::initialize_nodal_variables(), libMesh::DistributedMesh::insert_elem(), libMesh::DofMap::is_evaluable(), libMesh::SparsityPattern::Build::join(), libMesh::DofMap::last_dof(), libMesh::MeshTools::libmesh_assert_consistent_distributed(), libMesh::MeshTools::libmesh_assert_consistent_distributed_nodes(), libMesh::MeshTools::libmesh_assert_contiguous_dof_ids(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DofMap::local_variable_indices(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshBase::n_active_local_elem(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::DofMap::n_local_dofs(), libMesh::System::n_local_dofs(), libMesh::MeshBase::n_local_elem(), libMesh::MeshBase::n_local_nodes(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::SparsityPattern::Build::operator()(), libMesh::DistributedMesh::own_node(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::Nemesis_IO_Helper::put_cmap_params(), libMesh::Nemesis_IO_Helper::put_elem_cmap(), libMesh::Nemesis_IO_Helper::put_elem_map(), libMesh::Nemesis_IO_Helper::put_loadbal_param(), libMesh::Nemesis_IO_Helper::put_node_cmap(), libMesh::Nemesis_IO_Helper::put_node_map(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read(), libMesh::ExodusII_IO_Helper::read_elem_num_map(), libMesh::ExodusII_IO_Helper::read_global_values(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::System::read_header(), libMesh::System::read_legacy_data(), libMesh::ExodusII_IO_Helper::read_node_num_map(), libMesh::System::read_parallel_data(), libMesh::System::read_SCALAR_dofs(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::System::read_serialized_blocked_dof_objects(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::System::read_serialized_data(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::System::read_serialized_vector(), libMesh::System::read_serialized_vectors(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::CheckpointIO::select_split_config(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::PetscDMWrapper::set_point_range_in_section(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::MeshTools::total_weight(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::Parallel::Packing< T >::unpack(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::CheckpointIO::write(), libMesh::EquationSystems::write(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO::write_element_data(), libMesh::ExodusII_IO_Helper::write_element_values(), libMesh::ExodusII_IO_Helper::write_elements(), libMesh::ExodusII_IO::write_global_data(), libMesh::ExodusII_IO_Helper::write_global_values(), libMesh::System::write_header(), libMesh::ExodusII_IO::write_information_records(), libMesh::ExodusII_IO_Helper::write_information_records(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::UCDIO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data_discontinuous(), libMesh::ExodusII_IO_Helper::write_nodal_values(), libMesh::Nemesis_IO_Helper::write_nodesets(), libMesh::ExodusII_IO_Helper::write_nodesets(), libMesh::System::write_parallel_data(), libMesh::System::write_SCALAR_dofs(), libMesh::XdrIO::write_serialized_bc_names(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::System::write_serialized_blocked_dof_objects(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::System::write_serialized_data(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::XdrIO::write_serialized_subdomain_names(), libMesh::System::write_serialized_vector(), libMesh::System::write_serialized_vectors(), libMesh::Nemesis_IO_Helper::write_sidesets(), libMesh::ExodusII_IO_Helper::write_sidesets(), libMesh::ExodusII_IO::write_timestep(), libMesh::ExodusII_IO_Helper::write_timestep(), and libMesh::ExodusII_IO::write_timestep_discontinuous().
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Projects arbitrary functions onto the current solution. The function value f
and its gradient g
are user-provided cloneable functors. A gradient g
is only required/used for projecting onto finite element spaces with continuous derivatives. If non-default Parameters
are to be used, they can be provided in the parameters
argument.
This method projects an arbitrary function onto the solution via L2 projections and nodal interpolations on each element.
Definition at line 810 of file system_projection.C.
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Projects arbitrary functions onto the current solution. The function value f
and its gradient g
are user-provided cloneable functors. A gradient g
is only required/used for projecting onto finite element spaces with continuous derivatives. If non-default Parameters
are to be used, they can be provided in the parameters
argument.
This method projects an arbitrary function onto the solution via L2 projections and nodal interpolations on each element.
Definition at line 823 of file system_projection.C.
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This method projects an arbitrary function onto the solution via L2 projections and nodal interpolations on each element.
Definition at line 796 of file system_projection.C.
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Tells the System whether or not to project the solution vector onto new grids when the system is reinitialized. The solution will be projected unless project_solution_on_reinit() = false is called.
Definition at line 794 of file system.h.
References libMesh::System::_solution_projection.
Referenced by libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), and libMesh::MemorySolutionHistory::store().
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Projects arbitrary functions onto a vector of degree of freedom values for the current system. The function value f
and its gradient g
are user-provided cloneable functors. A gradient g
is only required/used for projecting onto finite element spaces with continuous derivatives. If non-default Parameters
are to be used, they can be provided in the parameters
argument.
Constrain the new vector using the requested adjoint rather than primal constraints if is_adjoint is non-negative.
This method projects an arbitrary function via L2 projections and nodal interpolations on each element.
Definition at line 851 of file system_projection.C.
Referenced by libMesh::NewmarkSolver::project_initial_accel(), libMesh::SecondOrderUnsteadySolver::project_initial_rate(), and libMesh::System::restrict_vectors().
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Projects arbitrary functions onto a vector of degree of freedom values for the current system. The function value f
and its gradient g
are user-provided cloneable functors. A gradient g
is only required/used for projecting onto finite element spaces with continuous derivatives. If non-default Parameters
are to be used, they can be provided in the parameters
argument.
Constrain the new vector using the requested adjoint rather than primal constraints if is_adjoint is non-negative.
This method projects an arbitrary function via L2 projections and nodal interpolations on each element.
Definition at line 877 of file system_projection.C.
References libMesh::NumericVector< T >::close(), libMesh::FEMFunctionBase< Output >::component(), libMesh::Utility::iota(), n_vars, libMesh::Threads::parallel_for(), libMesh::FEMContext::pre_fe_reinit(), libMesh::SCALAR, libMesh::DofMap::SCALAR_dof_indices(), and libMesh::NumericVector< T >::set().
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Projects arbitrary functions onto a vector of degree of freedom values for the current system. The function value fptr
and its gradient gptr
are represented by function pointers. A gradient gptr
is only required/used for projecting onto finite element spaces with continuous derivatives.
Constrain the new vector using the requested adjoint rather than primal constraints if is_adjoint is non-negative.
This method projects an arbitrary function via L2 projections and nodal interpolations on each element.
Definition at line 836 of file system_projection.C.
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Projects the vector defined on the old mesh onto the new mesh.
Constrain the new vector using the requested adjoint rather than primal constraints if is_adjoint is non-negative.
Definition at line 212 of file system_projection.C.
References libMesh::NumericVector< T >::clone().
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Projects the vector defined on the old mesh onto the new mesh. The original vector is unchanged and the new vector is passed through the second argument.
Constrain the new vector using the requested adjoint rather than primal constraints if is_adjoint is non-negative.
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This method creates a projection matrix which corresponds to the operation of project_vector between old and new solution spaces.
Heterogeneous Dirichlet boundary conditions are not taken into account here; if this matrix is used for prolongation (mesh refinement) on a side with a heterogeneous BC, the newly created degrees of freedom on that side will still match the coarse grid approximation of the BC, not the fine grid approximation.
This method creates a projection matrix which corresponds to the operation of project_vector between old and new solution spaces.
Definition at line 730 of file system_projection.C.
References libMesh::Utility::iota(), n_vars, libMesh::Threads::parallel_for(), libMesh::SCALAR, libMesh::DofMap::SCALAR_dof_indices(), and libMesh::SparseMatrix< T >::set().
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Prolong vectors after the mesh has refined
Definition at line 380 of file system.C.
References libMesh::System::restrict_vectors().
Referenced by libMesh::EquationSystems::reinit_solutions().
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For each of the system's quantities of interest q in qoi
[qoi_indices], and for a vector of parameters p, the parameter sensitivity Hessian H_ij is defined as H_ij = (d^2 q)/(d p_i d p_j) This Hessian is the output of this method, where for each q_i, H_jk is stored in hessian.second_derivative(i,j,k)
.
Note that in some cases only current_local_solution is used during assembly, and, therefore, if solution has been altered without update() being called, then the user must call update() before calling this function.
Reimplemented from libMesh::System.
Definition at line 1102 of file implicit_system.C.
References libMesh::ImplicitSystem::adjoint_solve(), libMesh::SensitivityData::allocate_hessian_data(), libMesh::ExplicitSystem::assemble_qoi(), libMesh::ExplicitSystem::assemble_qoi_derivative(), libMesh::ImplicitSystem::assembly(), libMesh::NumericVector< T >::close(), libMesh::SparseMatrix< T >::close(), libMesh::NumericVector< T >::dot(), libMesh::System::get_adjoint_rhs(), libMesh::System::get_adjoint_solution(), libMesh::System::get_sensitivity_solution(), libMesh::QoISet::has_index(), libMesh::System::is_adjoint_already_solved(), libMesh::ImplicitSystem::matrix, libMesh::System::n_qois(), libMesh::System::qoi, libMesh::Real, libMesh::ExplicitSystem::rhs, libMesh::SensitivityData::second_derivative(), libMesh::ImplicitSystem::sensitivity_solve(), libMesh::ParameterVector::size(), libMesh::System::solution, libMesh::TOLERANCE, libMesh::System::update(), and libMesh::SparseMatrix< T >::vector_mult().