#include <point_locator_tree.h>
Public Member Functions | |
PointLocatorTree (const MeshBase &mesh, const PointLocatorBase *master=nullptr) | |
PointLocatorTree (const MeshBase &mesh, const Trees::BuildType build_type, const PointLocatorBase *master=nullptr) | |
~PointLocatorTree () | |
virtual void | clear () override |
void | init (Trees::BuildType build_type) |
virtual void | init () override |
virtual const Elem * | operator() (const Point &p, const std::set< subdomain_id_type > *allowed_subdomains=nullptr) const override |
virtual void | operator() (const Point &p, std::set< const Elem *> &candidate_elements, const std::set< subdomain_id_type > *allowed_subdomains=nullptr) const override |
const Elem * | perform_linear_search (const Point &p, const std::set< subdomain_id_type > *allowed_subdomains, bool use_close_to_point, Real close_to_point_tolerance=TOLERANCE) const |
std::set< const Elem * > | perform_fuzzy_linear_search (const Point &p, const std::set< subdomain_id_type > *allowed_subdomains, Real close_to_point_tolerance=TOLERANCE) const |
virtual void | enable_out_of_mesh_mode () override |
virtual void | disable_out_of_mesh_mode () override |
void | set_target_bin_size (unsigned int target) |
unsigned int | get_target_bin_size () const |
virtual const Node * | locate_node (const Point &p, const std::set< subdomain_id_type > *allowed_subdomains=nullptr, Real tol=TOLERANCE) const |
bool | initialized () const |
virtual void | set_close_to_point_tol (Real close_to_point_tol) |
virtual void | unset_close_to_point_tol () |
const MeshBase & | get_mesh () const |
Static Public Member Functions | |
static std::unique_ptr< PointLocatorBase > | build (PointLocatorType t, const MeshBase &mesh, const PointLocatorBase *master=nullptr) |
static std::string | get_info () |
static void | print_info (std::ostream &out=libMesh::out) |
static unsigned int | n_objects () |
static void | enable_print_counter_info () |
static void | disable_print_counter_info () |
Public Attributes | |
bool | _verbose |
Protected Types | |
typedef std::map< std::string, std::pair< unsigned int, unsigned int > > | Counts |
Protected Member Functions | |
void | increment_constructor_count (const std::string &name) |
void | increment_destructor_count (const std::string &name) |
Protected Attributes | |
TreeBase * | _tree |
const Elem * | _element |
bool | _out_of_mesh_mode |
unsigned int | _target_bin_size |
Trees::BuildType | _build_type |
const PointLocatorBase * | _master |
const MeshBase & | _mesh |
bool | _initialized |
bool | _use_close_to_point_tol |
Real | _close_to_point_tol |
Static Protected Attributes | |
static Counts | _counts |
static Threads::atomic< unsigned int > | _n_objects |
static Threads::spin_mutex | _mutex |
static bool | _enable_print_counter = true |
This is a point locator. It locates points in space using a tree: given a mesh they return the element and local coordinates for a given point in global coordinates. Use PointLocatorBase::build()
to create objects of this type at run time.
Definition at line 48 of file point_locator_tree.h.
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protectedinherited |
Data structure to log the information. The log is identified by the class name.
Definition at line 117 of file reference_counter.h.
libMesh::PointLocatorTree::PointLocatorTree | ( | const MeshBase & | mesh, |
const PointLocatorBase * | master = nullptr |
||
) |
Constructor. Needs the mesh
in which the points should be located. Optionally takes a master interpolator. This master helps in saving memory by reducing the number of trees in use. Only the master locator holds a tree, the others simply use the master's tree.
Definition at line 37 of file point_locator_tree.C.
References _build_type, and init().
libMesh::PointLocatorTree::PointLocatorTree | ( | const MeshBase & | mesh, |
const Trees::BuildType | build_type, | ||
const PointLocatorBase * | master = nullptr |
||
) |
Constructor. Needs the mesh
in which the points should be located. Allows the user to specify the method to use when building the tree. Optionally takes a master interpolator. This master helps in saving memory by reducing the number of trees in use. Only the master locator holds a tree, the others simply use the master's tree. Allows the user to specify the build type.
Definition at line 51 of file point_locator_tree.C.
References _build_type, and init().
libMesh::PointLocatorTree::~PointLocatorTree | ( | ) |
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staticinherited |
Builds an PointLocator for the mesh mesh
. Optionally takes a master PointLocator to save memory. An std::unique_ptr<PointLocatorBase>
is returned to prevent memory leak. This way the user need not remember to delete the object.
Definition at line 62 of file point_locator_base.C.
References libMesh::Trees::ELEMENTS, libMesh::Trees::LOCAL_ELEMENTS, mesh, libMesh::TREE, libMesh::TREE_ELEMENTS, and libMesh::TREE_LOCAL_ELEMENTS.
Referenced by libMesh::MeshBase::point_locator(), and libMesh::MeshBase::sub_point_locator().
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overridevirtual |
Clears the locator. This function frees dynamic memory with "delete".
Implements libMesh::PointLocatorBase.
Definition at line 73 of file point_locator_tree.C.
References libMesh::PointLocatorBase::_initialized, libMesh::PointLocatorBase::_master, and _tree.
Referenced by ~PointLocatorTree().
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overridevirtual |
Disables out-of-mesh mode (default). If asked to find a point that is contained in no mesh at all, the point locator will now crash.
Implements libMesh::PointLocatorBase.
Definition at line 339 of file point_locator_tree.C.
References _out_of_mesh_mode.
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staticinherited |
Definition at line 106 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter.
Referenced by libMesh::LibMeshInit::LibMeshInit().
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overridevirtual |
Enables out-of-mesh mode. In this mode, if asked to find a point that is contained in no mesh at all, the point locator will return nullptr instead of crashing. Per default, this mode is off.
Implements libMesh::PointLocatorBase.
Definition at line 331 of file point_locator_tree.C.
References _out_of_mesh_mode.
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staticinherited |
Methods to enable/disable the reference counter output from print_info()
Definition at line 100 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter.
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staticinherited |
Gets a string containing the reference information.
Definition at line 47 of file reference_counter.C.
References libMesh::ReferenceCounter::_counts, and libMesh::Quality::name().
Referenced by libMesh::ReferenceCounter::print_info().
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inherited |
Get a const reference to this PointLocator's mesh.
Definition at line 96 of file point_locator_base.C.
References libMesh::PointLocatorBase::_mesh.
Referenced by libMesh::PeriodicBoundaries::neighbor().
unsigned int libMesh::PointLocatorTree::get_target_bin_size | ( | ) | const |
Get the target bin size.
Definition at line 351 of file point_locator_tree.C.
References _target_bin_size.
Referenced by init().
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inlineprotectedinherited |
Increments the construction counter. Should be called in the constructor of any derived class that will be reference counted.
Definition at line 181 of file reference_counter.h.
References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.
Referenced by libMesh::ReferenceCountedObject< RBParametrized >::ReferenceCountedObject().
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inlineprotectedinherited |
Increments the destruction counter. Should be called in the destructor of any derived class that will be reference counted.
Definition at line 194 of file reference_counter.h.
References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.
Referenced by libMesh::ReferenceCountedObject< RBParametrized >::~ReferenceCountedObject().
void libMesh::PointLocatorTree::init | ( | Trees::BuildType | build_type | ) |
Initializes the locator, so that the operator()
methods can be used. This function allocates dynamic memory with "new".
Definition at line 99 of file point_locator_tree.C.
References _build_type, _element, libMesh::PointLocatorBase::_initialized, libMesh::PointLocatorBase::_master, libMesh::PointLocatorBase::_mesh, _tree, std::abs(), libMesh::MeshTools::create_bounding_box(), libMesh::err, get_target_bin_size(), libMesh::PointLocatorBase::initialized(), libMesh::MeshBase::mesh_dimension(), and libMesh::Real.
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overridevirtual |
Initializes the locator, so that the operator()
methods can be used. This function allocates dynamic memory with "new".
Implements libMesh::PointLocatorBase.
Definition at line 92 of file point_locator_tree.C.
References _build_type.
Referenced by PointLocatorTree().
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inherited |
true
when this object is properly initialized and ready for use, false
otherwise. Definition at line 55 of file point_locator_base.C.
References libMesh::PointLocatorBase::_initialized.
Referenced by init().
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virtualinherited |
Virtual subclasses can override for efficiency, but the base class has a default implementation that works based on element lookup.
Optionally allows the user to restrict the subdomains searched; with such a restriction, only a Node belonging to an element on one or more of those subdomains will be returned.
Will only return a Node whose distance from p
is less than tol
multiplied by the size of a semilocal element which contains p
.
Definition at line 104 of file point_locator_base.C.
References libMesh::TensorTools::norm_sq(), libMesh::PointLocatorBase::operator()(), and libMesh::Real.
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inlinestaticinherited |
Prints the number of outstanding (created, but not yet destroyed) objects.
Definition at line 83 of file reference_counter.h.
References libMesh::ReferenceCounter::_n_objects.
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overridevirtual |
Locates the element in which the point with global coordinates p
is located, optionally restricted to a set of allowed subdomains. The mutable _element member is used to cache the result and allow it to be used during the next call to operator().
Implements libMesh::PointLocatorBase.
Definition at line 193 of file point_locator_tree.C.
References libMesh::PointLocatorBase::_close_to_point_tol, _element, libMesh::PointLocatorBase::_initialized, _out_of_mesh_mode, _tree, libMesh::PointLocatorBase::_use_close_to_point_tol, libMesh::PointLocatorBase::_verbose, libMesh::Elem::active(), libMesh::Elem::contains_point(), libMesh::TreeBase::find_element(), libMesh::out, and perform_linear_search().
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overridevirtual |
Locates a set of elements in proximity to the point with global coordinates p
Pure virtual. Optionally allows the user to restrict the subdomains searched.
Implements libMesh::PointLocatorBase.
Definition at line 253 of file point_locator_tree.C.
References libMesh::PointLocatorBase::_close_to_point_tol, libMesh::PointLocatorBase::_initialized, and perform_fuzzy_linear_search().
std::set< const Elem * > libMesh::PointLocatorTree::perform_fuzzy_linear_search | ( | const Point & | p, |
const std::set< subdomain_id_type > * | allowed_subdomains, | ||
Real | close_to_point_tolerance = TOLERANCE |
||
) | const |
A method to check if "fat" point p is in multiple elements. This would happen if p is close to a face or node. This is important for evaluating MeshFunction on faces when discontinuous shape functions are used.
Definition at line 305 of file point_locator_tree.C.
References _build_type, libMesh::PointLocatorBase::_mesh, libMesh::MeshBase::active_element_ptr_range(), libMesh::MeshBase::active_local_element_ptr_range(), and libMesh::Trees::LOCAL_ELEMENTS.
Referenced by operator()().
const Elem * libMesh::PointLocatorTree::perform_linear_search | ( | const Point & | p, |
const std::set< subdomain_id_type > * | allowed_subdomains, | ||
bool | use_close_to_point, | ||
Real | close_to_point_tolerance = TOLERANCE |
||
) | const |
As a fallback option, it's helpful to be able to do a linear search over the entire mesh. This can be used if operator() fails to find an element that contains p
, for example. Optionally specify a "close to point" tolerance to use in the linear search. Return nullptr if no element is found.
Definition at line 267 of file point_locator_tree.C.
References _build_type, libMesh::PointLocatorBase::_mesh, libMesh::MeshBase::active_element_ptr_range(), libMesh::MeshBase::active_local_element_ptr_range(), and libMesh::Trees::LOCAL_ELEMENTS.
Referenced by operator()().
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staticinherited |
Prints the reference information, by default to libMesh::out
.
Definition at line 87 of file reference_counter.C.
References libMesh::ReferenceCounter::_enable_print_counter, and libMesh::ReferenceCounter::get_info().
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virtualinherited |
Set a tolerance to use when determining if a point is contained within the mesh.
Definition at line 82 of file point_locator_base.C.
References libMesh::PointLocatorBase::_close_to_point_tol, and libMesh::PointLocatorBase::_use_close_to_point_tol.
Referenced by libMesh::MeshFunction::set_point_locator_tolerance().
void libMesh::PointLocatorTree::set_target_bin_size | ( | unsigned int | target | ) |
Set the target bin size.
Definition at line 345 of file point_locator_tree.C.
References _target_bin_size.
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virtualinherited |
Specify that we do not want to use a user-specified tolerance to determine if a point is contained within the mesh.
Definition at line 89 of file point_locator_base.C.
References libMesh::PointLocatorBase::_close_to_point_tol, libMesh::PointLocatorBase::_use_close_to_point_tol, and libMesh::TOLERANCE.
Referenced by libMesh::MeshFunction::unset_point_locator_tolerance().
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protected |
How the underlying tree is built.
Definition at line 194 of file point_locator_tree.h.
Referenced by init(), perform_fuzzy_linear_search(), perform_linear_search(), and PointLocatorTree().
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protectedinherited |
The tolerance to use.
Definition at line 207 of file point_locator_base.h.
Referenced by operator()(), libMesh::PointLocatorBase::set_close_to_point_tol(), and libMesh::PointLocatorBase::unset_close_to_point_tol().
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staticprotectedinherited |
Actually holds the data.
Definition at line 122 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::get_info(), libMesh::ReferenceCounter::increment_constructor_count(), and libMesh::ReferenceCounter::increment_destructor_count().
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mutableprotected |
Pointer to the last element that was found by the tree. Chances are that this may be close to the next call to operator()
...
Definition at line 178 of file point_locator_tree.h.
Referenced by init(), and operator()().
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staticprotectedinherited |
Flag to control whether reference count information is printed when print_info is called.
Definition at line 141 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::disable_print_counter_info(), libMesh::ReferenceCounter::enable_print_counter_info(), and libMesh::ReferenceCounter::print_info().
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protectedinherited |
true
when properly initialized, false
otherwise.
Definition at line 196 of file point_locator_base.h.
Referenced by clear(), init(), libMesh::PointLocatorBase::initialized(), and operator()().
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protectedinherited |
Const pointer to our master, initialized to nullptr
if none given. When using multiple PointLocators, one can be assigned master and be in charge of something that all can have access to.
Definition at line 186 of file point_locator_base.h.
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protectedinherited |
constant reference to the mesh in which the point is looked for.
Definition at line 191 of file point_locator_base.h.
Referenced by libMesh::PointLocatorBase::get_mesh(), init(), perform_fuzzy_linear_search(), and perform_linear_search().
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staticprotectedinherited |
Mutual exclusion object to enable thread-safe reference counting.
Definition at line 135 of file reference_counter.h.
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staticprotectedinherited |
The number of objects. Print the reference count information when the number returns to 0.
Definition at line 130 of file reference_counter.h.
Referenced by libMesh::ReferenceCounter::n_objects(), libMesh::ReferenceCounter::ReferenceCounter(), and libMesh::ReferenceCounter::~ReferenceCounter().
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protected |
true
if out-of-mesh mode is enabled. See enable_out_of_mesh_mode()
for details.
Definition at line 184 of file point_locator_tree.h.
Referenced by disable_out_of_mesh_mode(), enable_out_of_mesh_mode(), and operator()().
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protected |
Target bin size, which gets passed to the constructor of _tree.
Definition at line 189 of file point_locator_tree.h.
Referenced by get_target_bin_size(), and set_target_bin_size().
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protected |
Pointer to our tree. The tree is built at run-time through init()
. For servant PointLocators (not master), this simply points to the tree of the master.
Definition at line 171 of file point_locator_tree.h.
Referenced by clear(), init(), and operator()().
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protectedinherited |
true
if we will use a user-specified tolerance for locating the element.
Definition at line 202 of file point_locator_base.h.
Referenced by operator()(), libMesh::PointLocatorBase::set_close_to_point_tol(), and libMesh::PointLocatorBase::unset_close_to_point_tol().
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inherited |
Boolean flag to indicate whether to print out extra info.
Definition at line 178 of file point_locator_base.h.
Referenced by operator()().