Link to the source code for this example:
Open miscellaneous_ex7 in new tab.The console output of the program:
CXX example_dbg-biharmonic.o CXX example_dbg-biharmonic_jr.o CXXLD example-dbg *************************************************************** * Running Example miscellaneous_ex7: * example-opt --verbose dim=1 N=1024 initial_state=strip initial_center=0.5 initial_width=0.1 dt=1e-10 max_time=1e-8 *************************************************************** Biharmonic parameters: verbose mode is on mesh dimension = 1 initial linear mesh size = 1024 kappa = 1 growth = 0 degenerate = 0 Cahn-Hillard = 0 netforce = 0 energy = 1 tol = 1e-08 theta = 0.001 theta_c = 1 log truncation = 2 initial timestep size = 1e-10 initial state: strip initial state center = 0.5 initial state width = 0.1 initial time (min_time) = 0 integration time = 1e-08 final time (max_time) = 1e-08 Crank-Nicholson weight = 1 Output timestep = 0 Output filename base: bih.1 >>> Initializing Biharmonic >>> Initializing Biharmonic::JR <<< Initializing Biharmonic::JR <<< Initializing Biharmonic Writing state 1 at time 0 to file bih.1.e; output a total of 1 states so far Solving for state 2, time 0 NL step 0, |residual|_2 = 3.865471e+00 NL step 1, |residual|_2 = 3.700105e-14 Writing state 2 at time 1.000000e-10 to file bih.1.e; output a total of 2 states so far Solving for state 3, time 1.000000e-10 NL step 0, |residual|_2 = 3.861870e+00 NL step 1, |residual|_2 = 9.419949e-15 Writing state 3 at time 2.000000e-10 to file bih.1.e; output a total of 3 states so far Solving for state 4, time 2.000000e-10 NL step 0, |residual|_2 = 3.858634e+00 NL step 1, |residual|_2 = 2.484184e-14 Writing state 4 at time 3.000000e-10 to file bih.1.e; output a total of 4 states so far Solving for state 5, time 3.000000e-10 NL step 0, |residual|_2 = 3.855483e+00 NL step 1, |residual|_2 = 2.581990e-15 Writing state 5 at time 4.000000e-10 to file bih.1.e; output a total of 5 states so far Solving for state 6, time 4.000000e-10 NL step 0, |residual|_2 = 3.852464e+00 NL step 1, |residual|_2 = 1.013857e-14 Writing state 6 at time 5.000000e-10 to file bih.1.e; output a total of 6 states so far Solving for state 7, time 5.000000e-10 NL step 0, |residual|_2 = 3.849501e+00 NL step 1, |residual|_2 = 1.458791e-14 Writing state 7 at time 6.000000e-10 to file bih.1.e; output a total of 7 states so far Solving for state 8, time 6.000000e-10 NL step 0, |residual|_2 = 3.846621e+00 NL step 1, |residual|_2 = 1.080643e-14 Writing state 8 at time 7.000000e-10 to file bih.1.e; output a total of 8 states so far Solving for state 9, time 7.000000e-10 NL step 0, |residual|_2 = 3.843784e+00 NL step 1, |residual|_2 = 1.551695e-14 Writing state 9 at time 8.000000e-10 to file bih.1.e; output a total of 9 states so far Solving for state 10, time 8.000000e-10 NL step 0, |residual|_2 = 3.841009e+00 NL step 1, |residual|_2 = 1.690656e-14 Writing state 10 at time 9.000000e-10 to file bih.1.e; output a total of 10 states so far Solving for state 11, time 9.000000e-10 NL step 0, |residual|_2 = 3.838268e+00 NL step 1, |residual|_2 = 2.450236e-15 Writing state 11 at time 1.000000e-09 to file bih.1.e; output a total of 11 states so far Solving for state 12, time 1.000000e-09 NL step 0, |residual|_2 = 3.835577e+00 NL step 1, |residual|_2 = 6.586079e-15 Writing state 12 at time 1.100000e-09 to file bih.1.e; output a total of 12 states so far Solving for state 13, time 1.100000e-09 NL step 0, |residual|_2 = 3.832915e+00 NL step 1, |residual|_2 = 5.896559e-15 Writing state 13 at time 1.200000e-09 to file bih.1.e; output a total of 13 states so far Solving for state 14, time 1.200000e-09 NL step 0, |residual|_2 = 3.830295e+00 NL step 1, |residual|_2 = 3.431924e-15 Writing state 14 at time 1.300000e-09 to file bih.1.e; output a total of 14 states so far Solving for state 15, time 1.300000e-09 NL step 0, |residual|_2 = 3.827700e+00 NL step 1, |residual|_2 = 5.412929e-15 Writing state 15 at time 1.400000e-09 to file bih.1.e; output a total of 15 states so far Solving for state 16, time 1.400000e-09 NL step 0, |residual|_2 = 3.825140e+00 NL step 1, |residual|_2 = 4.992858e-15 Writing state 16 at time 1.500000e-09 to file bih.1.e; output a total of 16 states so far Solving for state 17, time 1.500000e-09 NL step 0, |residual|_2 = 3.822604e+00 NL step 1, |residual|_2 = 9.898635e-15 Writing state 17 at time 1.600000e-09 to file bih.1.e; output a total of 17 states so far Solving for state 18, time 1.600000e-09 NL step 0, |residual|_2 = 3.820098e+00 NL step 1, |residual|_2 = 4.071119e-15 Writing state 18 at time 1.700000e-09 to file bih.1.e; output a total of 18 states so far Solving for state 19, time 1.700000e-09 NL step 0, |residual|_2 = 3.817613e+00 NL step 1, |residual|_2 = 2.620636e-15 Writing state 19 at time 1.800000e-09 to file bih.1.e; output a total of 19 states so far Solving for state 20, time 1.800000e-09 NL step 0, |residual|_2 = 3.815156e+00 NL step 1, |residual|_2 = 5.960056e-15 Writing state 20 at time 1.900000e-09 to file bih.1.e; output a total of 20 states so far Solving for state 21, time 1.900000e-09 NL step 0, |residual|_2 = 3.812718e+00 NL step 1, |residual|_2 = 1.107967e-14 Writing state 21 at time 2.000000e-09 to file bih.1.e; output a total of 21 states so far Solving for state 22, time 2.000000e-09 NL step 0, |residual|_2 = 3.810305e+00 NL step 1, |residual|_2 = 1.535662e-14 Writing state 22 at time 2.100000e-09 to file bih.1.e; output a total of 22 states so far Solving for state 23, time 2.100000e-09 NL step 0, |residual|_2 = 3.807909e+00 NL step 1, |residual|_2 = 1.176115e-14 Writing state 23 at time 2.200000e-09 to file bih.1.e; output a total of 23 states so far Solving for state 24, time 2.200000e-09 NL step 0, |residual|_2 = 3.805536e+00 NL step 1, |residual|_2 = 1.691962e-14 Writing state 24 at time 2.300000e-09 to file bih.1.e; output a total of 24 states so far Solving for state 25, time 2.300000e-09 NL step 0, |residual|_2 = 3.803179e+00 NL step 1, |residual|_2 = 3.363071e-15 Writing state 25 at time 2.400000e-09 to file bih.1.e; output a total of 25 states so far Solving for state 26, time 2.400000e-09 NL step 0, |residual|_2 = 3.800842e+00 NL step 1, |residual|_2 = 1.200336e-14 Writing state 26 at time 2.500000e-09 to file bih.1.e; output a total of 26 states so far Solving for state 27, time 2.500000e-09 NL step 0, |residual|_2 = 3.798522e+00 NL step 1, |residual|_2 = 8.651098e-15 Writing state 27 at time 2.600000e-09 to file bih.1.e; output a total of 27 states so far Solving for state 28, time 2.600000e-09 NL step 0, |residual|_2 = 3.796220e+00 NL step 1, |residual|_2 = 6.598501e-15 Writing state 28 at time 2.700000e-09 to file bih.1.e; output a total of 28 states so far Solving for state 29, time 2.700000e-09 NL step 0, |residual|_2 = 3.793932e+00 NL step 1, |residual|_2 = 6.938762e-15 Writing state 29 at time 2.800000e-09 to file bih.1.e; output a total of 29 states so far Solving for state 30, time 2.800000e-09 NL step 0, |residual|_2 = 3.791663e+00 NL step 1, |residual|_2 = 7.534192e-15 Writing state 30 at time 2.900000e-09 to file bih.1.e; output a total of 30 states so far Solving for state 31, time 2.900000e-09 NL step 0, |residual|_2 = 3.789407e+00 NL step 1, |residual|_2 = 6.826261e-15 Writing state 31 at time 3.000000e-09 to file bih.1.e; output a total of 31 states so far Solving for state 32, time 3.000000e-09 NL step 0, |residual|_2 = 3.787167e+00 NL step 1, |residual|_2 = 1.366032e-14 Writing state 32 at time 3.100000e-09 to file bih.1.e; output a total of 32 states so far Solving for state 33, time 3.100000e-09 NL step 0, |residual|_2 = 3.784941e+00 NL step 1, |residual|_2 = 7.775207e-15 Writing state 33 at time 3.200000e-09 to file bih.1.e; output a total of 33 states so far Solving for state 34, time 3.200000e-09 NL step 0, |residual|_2 = 3.782730e+00 NL step 1, |residual|_2 = 5.915989e-15 Writing state 34 at time 3.300000e-09 to file bih.1.e; output a total of 34 states so far Solving for state 35, time 3.300000e-09 NL step 0, |residual|_2 = 3.780531e+00 NL step 1, |residual|_2 = 1.583271e-14 Writing state 35 at time 3.400000e-09 to file bih.1.e; output a total of 35 states so far Solving for state 36, time 3.400000e-09 NL step 0, |residual|_2 = 3.778347e+00 NL step 1, |residual|_2 = 2.867504e-15 Writing state 36 at time 3.500000e-09 to file bih.1.e; output a total of 36 states so far Solving for state 37, time 3.500000e-09 NL step 0, |residual|_2 = 3.776174e+00 NL step 1, |residual|_2 = 6.916565e-15 Writing state 37 at time 3.600000e-09 to file bih.1.e; output a total of 37 states so far Solving for state 38, time 3.600000e-09 NL step 0, |residual|_2 = 3.774015e+00 NL step 1, |residual|_2 = 8.571053e-15 Writing state 38 at time 3.700000e-09 to file bih.1.e; output a total of 38 states so far Solving for state 39, time 3.700000e-09 NL step 0, |residual|_2 = 3.771868e+00 NL step 1, |residual|_2 = 2.199033e-14 Writing state 39 at time 3.800000e-09 to file bih.1.e; output a total of 39 states so far Solving for state 40, time 3.800000e-09 NL step 0, |residual|_2 = 3.769733e+00 NL step 1, |residual|_2 = 6.211343e-14 Writing state 40 at time 3.900000e-09 to file bih.1.e; output a total of 40 states so far Solving for state 41, time 3.900000e-09 NL step 0, |residual|_2 = 3.767609e+00 NL step 1, |residual|_2 = 1.775819e-13 Writing state 41 at time 4.000000e-09 to file bih.1.e; output a total of 41 states so far Solving for state 42, time 4.000000e-09 NL step 0, |residual|_2 = 3.765498e+00 NL step 1, |residual|_2 = 5.111619e-13 Writing state 42 at time 4.100000e-09 to file bih.1.e; output a total of 42 states so far Solving for state 43, time 4.100000e-09 NL step 0, |residual|_2 = 3.763397e+00 NL step 1, |residual|_2 = 1.471075e-12 Writing state 43 at time 4.200000e-09 to file bih.1.e; output a total of 43 states so far Solving for state 44, time 4.200000e-09 NL step 0, |residual|_2 = 3.761307e+00 NL step 1, |residual|_2 = 4.234083e-12 Writing state 44 at time 4.300000e-09 to file bih.1.e; output a total of 44 states so far Solving for state 45, time 4.300000e-09 NL step 0, |residual|_2 = 3.759228e+00 NL step 1, |residual|_2 = 1.218675e-11 Writing state 45 at time 4.400000e-09 to file bih.1.e; output a total of 45 states so far Solving for state 46, time 4.400000e-09 NL step 0, |residual|_2 = 3.757160e+00 NL step 1, |residual|_2 = 3.507717e-11 Writing state 46 at time 4.500000e-09 to file bih.1.e; output a total of 46 states so far Solving for state 47, time 4.500000e-09 NL step 0, |residual|_2 = 3.755101e+00 NL step 1, |residual|_2 = 1.009625e-10 Writing state 47 at time 4.600000e-09 to file bih.1.e; output a total of 47 states so far Solving for state 48, time 4.600000e-09 NL step 0, |residual|_2 = 3.753053e+00 NL step 1, |residual|_2 = 2.906006e-10 Writing state 48 at time 4.700000e-09 to file bih.1.e; output a total of 48 states so far Solving for state 49, time 4.700000e-09 NL step 0, |residual|_2 = 3.751014e+00 NL step 1, |residual|_2 = 8.364360e-10 Writing state 49 at time 4.800000e-09 to file bih.1.e; output a total of 49 states so far Solving for state 50, time 4.800000e-09 NL step 0, |residual|_2 = 3.748985e+00 NL step 1, |residual|_2 = 2.407514e-09 Writing state 50 at time 4.900000e-09 to file bih.1.e; output a total of 50 states so far Solving for state 51, time 4.900000e-09 NL step 0, |residual|_2 = 3.746966e+00 NL step 1, |residual|_2 = 6.929549e-09 Writing state 51 at time 5.000000e-09 to file bih.1.e; output a total of 51 states so far Solving for state 52, time 5.000000e-09 NL step 0, |residual|_2 = 3.744956e+00 NL step 1, |residual|_2 = 1.994532e-08 Writing state 52 at time 5.100000e-09 to file bih.1.e; output a total of 52 states so far Solving for state 53, time 5.100000e-09 NL step 0, |residual|_2 = 3.742955e+00 NL step 1, |residual|_2 = 5.740863e-08 NL step 2, |residual|_2 = 2.384681e-15 Writing state 53 at time 5.200000e-09 to file bih.1.e; output a total of 53 states so far Solving for state 54, time 5.200000e-09 NL step 0, |residual|_2 = 3.740963e+00 NL step 1, |residual|_2 = 5.660993e-08 NL step 2, |residual|_2 = 2.419184e-15 Writing state 54 at time 5.300000e-09 to file bih.1.e; output a total of 54 states so far Solving for state 55, time 5.300000e-09 NL step 0, |residual|_2 = 3.738979e+00 NL step 1, |residual|_2 = 5.606989e-08 NL step 2, |residual|_2 = 2.469188e-15 Writing state 55 at time 5.400000e-09 to file bih.1.e; output a total of 55 states so far Solving for state 56, time 5.400000e-09 NL step 0, |residual|_2 = 3.737005e+00 NL step 1, |residual|_2 = 5.559189e-08 NL step 2, |residual|_2 = 2.442416e-15 Writing state 56 at time 5.500000e-09 to file bih.1.e; output a total of 56 states so far Solving for state 57, time 5.500000e-09 NL step 0, |residual|_2 = 3.735039e+00 NL step 1, |residual|_2 = 5.518270e-08 NL step 2, |residual|_2 = 2.431436e-15 Writing state 57 at time 5.600000e-09 to file bih.1.e; output a total of 57 states so far Solving for state 58, time 5.600000e-09 NL step 0, |residual|_2 = 3.733082e+00 NL step 1, |residual|_2 = 5.480558e-08 NL step 2, |residual|_2 = 2.400013e-15 Writing state 58 at time 5.700000e-09 to file bih.1.e; output a total of 58 states so far Solving for state 59, time 5.700000e-09 NL step 0, |residual|_2 = 3.731132e+00 NL step 1, |residual|_2 = 5.446405e-08 NL step 2, |residual|_2 = 2.488918e-15 Writing state 59 at time 5.800000e-09 to file bih.1.e; output a total of 59 states so far Solving for state 60, time 5.800000e-09 NL step 0, |residual|_2 = 3.729191e+00 NL step 1, |residual|_2 = 5.414304e-08 NL step 2, |residual|_2 = 2.415734e-15 Writing state 60 at time 5.900000e-09 to file bih.1.e; output a total of 60 states so far Solving for state 61, time 5.900000e-09 NL step 0, |residual|_2 = 3.727257e+00 NL step 1, |residual|_2 = 5.384478e-08 NL step 2, |residual|_2 = 2.465045e-15 Writing state 61 at time 6.000000e-09 to file bih.1.e; output a total of 61 states so far Solving for state 62, time 6.000000e-09 NL step 0, |residual|_2 = 3.725332e+00 NL step 1, |residual|_2 = 5.356114e-08 NL step 2, |residual|_2 = 2.404997e-15 Writing state 62 at time 6.100000e-09 to file bih.1.e; output a total of 62 states so far Solving for state 63, time 6.100000e-09 NL step 0, |residual|_2 = 3.723414e+00 NL step 1, |residual|_2 = 5.329367e-08 NL step 2, |residual|_2 = 2.347143e-15 Writing state 63 at time 6.200000e-09 to file bih.1.e; output a total of 63 states so far Solving for state 64, time 6.200000e-09 NL step 0, |residual|_2 = 3.721504e+00 NL step 1, |residual|_2 = 5.303732e-08 NL step 2, |residual|_2 = 2.466288e-15 Writing state 64 at time 6.300000e-09 to file bih.1.e; output a total of 64 states so far Solving for state 65, time 6.300000e-09 NL step 0, |residual|_2 = 3.719601e+00 NL step 1, |residual|_2 = 5.279325e-08 NL step 2, |residual|_2 = 2.396288e-15 Writing state 65 at time 6.400000e-09 to file bih.1.e; output a total of 65 states so far Solving for state 66, time 6.400000e-09 NL step 0, |residual|_2 = 3.717706e+00 NL step 1, |residual|_2 = 5.255803e-08 NL step 2, |residual|_2 = 2.367857e-15 Writing state 66 at time 6.500000e-09 to file bih.1.e; output a total of 66 states so far Solving for state 67, time 6.500000e-09 NL step 0, |residual|_2 = 3.715818e+00 NL step 1, |residual|_2 = 5.233254e-08 NL step 2, |residual|_2 = 2.396083e-15 Writing state 67 at time 6.600000e-09 to file bih.1.e; output a total of 67 states so far Solving for state 68, time 6.600000e-09 NL step 0, |residual|_2 = 3.713937e+00 NL step 1, |residual|_2 = 5.211431e-08 NL step 2, |residual|_2 = 2.331777e-15 Writing state 68 at time 6.700000e-09 to file bih.1.e; output a total of 68 states so far Solving for state 69, time 6.700000e-09 NL step 0, |residual|_2 = 3.712063e+00 NL step 1, |residual|_2 = 5.190405e-08 NL step 2, |residual|_2 = 2.171709e-15 Writing state 69 at time 6.800000e-09 to file bih.1.e; output a total of 69 states so far Solving for state 70, time 6.800000e-09 NL step 0, |residual|_2 = 3.710197e+00 NL step 1, |residual|_2 = 5.169989e-08 NL step 2, |residual|_2 = 2.386625e-15 Writing state 70 at time 6.900000e-09 to file bih.1.e; output a total of 70 states so far Solving for state 71, time 6.900000e-09 NL step 0, |residual|_2 = 3.708336e+00 NL step 1, |residual|_2 = 5.150241e-08 NL step 2, |residual|_2 = 2.390530e-15 Writing state 71 at time 7.000000e-09 to file bih.1.e; output a total of 71 states so far Solving for state 72, time 7.000000e-09 NL step 0, |residual|_2 = 3.706484e+00 NL step 1, |residual|_2 = 5.131016e-08 NL step 2, |residual|_2 = 2.452716e-15 Writing state 72 at time 7.100000e-09 to file bih.1.e; output a total of 72 states so far Solving for state 73, time 7.100000e-09 NL step 0, |residual|_2 = 3.704637e+00 NL step 1, |residual|_2 = 5.112361e-08 NL step 2, |residual|_2 = 2.443674e-15 Writing state 73 at time 7.200000e-09 to file bih.1.e; output a total of 73 states so far Solving for state 74, time 7.200000e-09 NL step 0, |residual|_2 = 3.702797e+00 NL step 1, |residual|_2 = 5.094161e-08 NL step 2, |residual|_2 = 2.504119e-15 Writing state 74 at time 7.300000e-09 to file bih.1.e; output a total of 74 states so far Solving for state 75, time 7.300000e-09 NL step 0, |residual|_2 = 3.700963e+00 NL step 1, |residual|_2 = 5.076456e-08 NL step 2, |residual|_2 = 2.483832e-15 Writing state 75 at time 7.400000e-09 to file bih.1.e; output a total of 75 states so far Solving for state 76, time 7.400000e-09 NL step 0, |residual|_2 = 3.699137e+00 NL step 1, |residual|_2 = 5.059150e-08 NL step 2, |residual|_2 = 2.485467e-15 Writing state 76 at time 7.500000e-09 to file bih.1.e; output a total of 76 states so far Solving for state 77, time 7.500000e-09 NL step 0, |residual|_2 = 3.697316e+00 NL step 1, |residual|_2 = 5.042279e-08 NL step 2, |residual|_2 = 2.485405e-15 Writing state 77 at time 7.600000e-09 to file bih.1.e; output a total of 77 states so far Solving for state 78, time 7.600000e-09 NL step 0, |residual|_2 = 3.695502e+00 NL step 1, |residual|_2 = 5.025763e-08 NL step 2, |residual|_2 = 2.462417e-15 Writing state 78 at time 7.700000e-09 to file bih.1.e; output a total of 78 states so far Solving for state 79, time 7.700000e-09 NL step 0, |residual|_2 = 3.693694e+00 NL step 1, |residual|_2 = 5.009634e-08 NL step 2, |residual|_2 = 2.330280e-15 Writing state 79 at time 7.800000e-09 to file bih.1.e; output a total of 79 states so far Solving for state 80, time 7.800000e-09 NL step 0, |residual|_2 = 3.691892e+00 NL step 1, |residual|_2 = 4.993823e-08 NL step 2, |residual|_2 = 2.557443e-15 Writing state 80 at time 7.900000e-09 to file bih.1.e; output a total of 80 states so far Solving for state 81, time 7.900000e-09 NL step 0, |residual|_2 = 3.690096e+00 NL step 1, |residual|_2 = 4.978357e-08 NL step 2, |residual|_2 = 2.510954e-15 Writing state 81 at time 8.000000e-09 to file bih.1.e; output a total of 81 states so far Solving for state 82, time 8.000000e-09 NL step 0, |residual|_2 = 3.688306e+00 NL step 1, |residual|_2 = 4.963179e-08 NL step 2, |residual|_2 = 2.532870e-15 Writing state 82 at time 8.100000e-09 to file bih.1.e; output a total of 82 states so far Solving for state 83, time 8.100000e-09 NL step 0, |residual|_2 = 3.686522e+00 NL step 1, |residual|_2 = 4.948314e-08 NL step 2, |residual|_2 = 2.409232e-15 Writing state 83 at time 8.200000e-09 to file bih.1.e; output a total of 83 states so far Solving for state 84, time 8.200000e-09 NL step 0, |residual|_2 = 3.684744e+00 NL step 1, |residual|_2 = 4.933709e-08 NL step 2, |residual|_2 = 2.373077e-15 Writing state 84 at time 8.300000e-09 to file bih.1.e; output a total of 84 states so far Solving for state 85, time 8.300000e-09 NL step 0, |residual|_2 = 3.682971e+00 NL step 1, |residual|_2 = 4.919388e-08 NL step 2, |residual|_2 = 2.567430e-15 Writing state 85 at time 8.400000e-09 to file bih.1.e; output a total of 85 states so far Solving for state 86, time 8.400000e-09 NL step 0, |residual|_2 = 3.681205e+00 NL step 1, |residual|_2 = 4.905306e-08 NL step 2, |residual|_2 = 2.455994e-15 Writing state 86 at time 8.500000e-09 to file bih.1.e; output a total of 86 states so far Solving for state 87, time 8.500000e-09 NL step 0, |residual|_2 = 3.679443e+00 NL step 1, |residual|_2 = 4.891484e-08 NL step 2, |residual|_2 = 2.374471e-15 Writing state 87 at time 8.600000e-09 to file bih.1.e; output a total of 87 states so far Solving for state 88, time 8.600000e-09 NL step 0, |residual|_2 = 3.677688e+00 NL step 1, |residual|_2 = 4.877880e-08 NL step 2, |residual|_2 = 2.483941e-15 Writing state 88 at time 8.700000e-09 to file bih.1.e; output a total of 88 states so far Solving for state 89, time 8.700000e-09 NL step 0, |residual|_2 = 3.675938e+00 NL step 1, |residual|_2 = 4.864515e-08 NL step 2, |residual|_2 = 2.398725e-15 Writing state 89 at time 8.800000e-09 to file bih.1.e; output a total of 89 states so far Solving for state 90, time 8.800000e-09 NL step 0, |residual|_2 = 3.674193e+00 NL step 1, |residual|_2 = 4.851352e-08 NL step 2, |residual|_2 = 2.530767e-15 Writing state 90 at time 8.900000e-09 to file bih.1.e; output a total of 90 states so far Solving for state 91, time 8.900000e-09 NL step 0, |residual|_2 = 3.672454e+00 NL step 1, |residual|_2 = 4.838409e-08 NL step 2, |residual|_2 = 2.615689e-15 Writing state 91 at time 9.000000e-09 to file bih.1.e; output a total of 91 states so far Solving for state 92, time 9.000000e-09 NL step 0, |residual|_2 = 3.670720e+00 NL step 1, |residual|_2 = 4.825654e-08 NL step 2, |residual|_2 = 2.568743e-15 Writing state 92 at time 9.100000e-09 to file bih.1.e; output a total of 92 states so far Solving for state 93, time 9.100000e-09 NL step 0, |residual|_2 = 3.668992e+00 NL step 1, |residual|_2 = 4.813102e-08 NL step 2, |residual|_2 = 2.470177e-15 Writing state 93 at time 9.200000e-09 to file bih.1.e; output a total of 93 states so far Solving for state 94, time 9.200000e-09 NL step 0, |residual|_2 = 3.667269e+00 NL step 1, |residual|_2 = 4.800725e-08 NL step 2, |residual|_2 = 2.370272e-15 Writing state 94 at time 9.300000e-09 to file bih.1.e; output a total of 94 states so far Solving for state 95, time 9.300000e-09 NL step 0, |residual|_2 = 3.665550e+00 NL step 1, |residual|_2 = 4.788536e-08 NL step 2, |residual|_2 = 2.495545e-15 Writing state 95 at time 9.400000e-09 to file bih.1.e; output a total of 95 states so far Solving for state 96, time 9.400000e-09 NL step 0, |residual|_2 = 3.663837e+00 NL step 1, |residual|_2 = 4.776511e-08 NL step 2, |residual|_2 = 2.493295e-15 Writing state 96 at time 9.500000e-09 to file bih.1.e; output a total of 96 states so far Solving for state 97, time 9.500000e-09 NL step 0, |residual|_2 = 3.662129e+00 NL step 1, |residual|_2 = 4.764662e-08 NL step 2, |residual|_2 = 2.383296e-15 Writing state 97 at time 9.600000e-09 to file bih.1.e; output a total of 97 states so far Solving for state 98, time 9.600000e-09 NL step 0, |residual|_2 = 3.660426e+00 NL step 1, |residual|_2 = 4.752966e-08 NL step 2, |residual|_2 = 2.499442e-15 Writing state 98 at time 9.700000e-09 to file bih.1.e; output a total of 98 states so far Solving for state 99, time 9.700000e-09 NL step 0, |residual|_2 = 3.658728e+00 NL step 1, |residual|_2 = 4.741435e-08 NL step 2, |residual|_2 = 2.524939e-15 Writing state 99 at time 9.800000e-09 to file bih.1.e; output a total of 99 states so far Solving for state 100, time 9.800000e-09 NL step 0, |residual|_2 = 3.657035e+00 NL step 1, |residual|_2 = 4.730047e-08 NL step 2, |residual|_2 = 2.548990e-15 Writing state 100 at time 9.900000e-09 to file bih.1.e; output a total of 100 states so far Solving for state 101, time 9.900000e-09 NL step 0, |residual|_2 = 3.655347e+00 NL step 1, |residual|_2 = 4.718814e-08 NL step 2, |residual|_2 = 2.498620e-15 Writing state 101 at time 1.000000e-08 to file bih.1.e; output a total of 101 states so far Solving for state 102, time 1.000000e-08 NL step 0, |residual|_2 = 3.653664e+00 NL step 1, |residual|_2 = 4.707716e-08 NL step 2, |residual|_2 = 2.539593e-15 Writing state 102 at time 1.010000e-08 to file bih.1.e; output a total of 102 states so far Writing state 102 at time 1.010000e-08 to file bih.1.e; output a total of 103 states so far ------------------------------------------------------------------------------------------------------------------- | Time: Wed Apr 13 09:36:03 2016 | | OS: Darwin | | HostName: peterson-laptop.local | | OS Release: 15.0.0 | | OS Version: Darwin Kernel Version 15.0.0: Sat Sep 19 15:53:46 PDT 2015; root:xnu-3247.10.11~1/RELEASE_X86_64 | | Machine: x86_64 | | Username: petejw | | Configuration: ../configure 'INSTALL=/usr/bin/install -C' | | '--with-methods=opt dbg' | | '--prefix=/Users/petejw/projects/libmesh_git/installed' | | '--enable-perflog' | | '--enable-tracefiles' | | '--disable-blocked-storage' | | '--enable-default-comm-world' | | '--enable-tecio' | | '--enable-unique-ptr' | | '--enable-ifem' | | 'PETSC_DIR=/opt/moose/petsc/mpich_petsc-3.6.1/clang-opt-superlu' | | 'SLEPC_DIR=/opt/petejw/slepc/3.6.1' | | 'CPPFLAGS= ' | | 'LIBS= ' | | 'CPPFLAGS= ' | | 'LIBS= ' | | '--disable-netcdf-4' | | '--disable-testsets' | | 'CXX=mpicxx' | | 'CC=mpicc' | | 'F77=mpif77' | | 'FC=mpif90' | | 'CPPFLAGS= ' | | 'LIBS= ' | ------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------- | libMesh Performance: Alive time=2.01132, Active time=1.53902 | ----------------------------------------------------------------------------------------------------------------- | Event nCalls Total Time Avg Time Total Time Avg Time % of Active Time | | w/o Sub w/o Sub With Sub With Sub w/o S With S | |-----------------------------------------------------------------------------------------------------------------| | | | | | DofMap | | add_neighbors_to_send_list() 1 0.0002 0.000156 0.0002 0.000156 0.01 0.01 | | build_constraint_matrix() 412672 0.0607 0.000000 0.0607 0.000000 3.95 3.95 | | build_sparsity() 1 0.0013 0.001290 0.0016 0.001575 0.08 0.10 | | constrain_elem_matrix() 154624 0.0211 0.000000 0.0211 0.000000 1.37 1.37 | | constrain_elem_vector() 258048 0.0359 0.000000 0.0359 0.000000 2.33 2.33 | | create_dof_constraints() 1 0.0012 0.001222 0.0023 0.002310 0.08 0.15 | | distribute_dofs() 1 0.0002 0.000208 0.0011 0.001125 0.01 0.07 | | dof_indices() 521220 0.0676 0.000000 0.0676 0.000000 4.40 4.40 | | enforce_constraints_exactly() 505 0.0034 0.000007 0.0034 0.000007 0.22 0.22 | | prepare_send_list() 2 0.0000 0.000000 0.0000 0.000000 0.00 0.00 | | reinit() 1 0.0009 0.000916 0.0009 0.000916 0.06 0.06 | | | | EquationSystems | | build_solution_vector() 103 0.2759 0.002679 0.2976 0.002889 17.93 19.33 | | | | ExodusII_IO | | write_nodal_data() 103 0.0040 0.000039 0.0040 0.000039 0.26 0.26 | | | | FE | | compute_shape_functions() 407 0.0021 0.000005 0.0021 0.000005 0.13 0.13 | | init_shape_functions() 407 0.0055 0.000014 0.0055 0.000014 0.36 0.36 | | inverse_map() 8 0.0000 0.000001 0.0000 0.000001 0.00 0.00 | | | | FEMap | | compute_affine_map() 412676 0.0931 0.000000 0.0931 0.000000 6.05 6.05 | | compute_face_map() 2 0.0000 0.000002 0.0000 0.000002 0.00 0.00 | | init_face_shape_functions() 2 0.0000 0.000001 0.0000 0.000001 0.00 0.00 | | init_reference_to_physical_map() 407 0.0004 0.000001 0.0004 0.000001 0.03 0.03 | | | | GenericProjector | | operator() 1 0.0020 0.001981 0.0038 0.003793 0.13 0.25 | | project_edges 1024 0.0001 0.000000 0.0001 0.000000 0.00 0.00 | | project_interior 1024 0.0001 0.000000 0.0001 0.000000 0.00 0.00 | | project_nodes 1024 0.0007 0.000001 0.0007 0.000001 0.05 0.05 | | project_sides 1024 0.0001 0.000000 0.0001 0.000000 0.00 0.00 | | | | Mesh | | find_neighbors() 1 0.0016 0.001626 0.0016 0.001626 0.11 0.11 | | renumber_nodes_and_elem() 2 0.0000 0.000015 0.0000 0.000015 0.00 0.00 | | | | MeshOutput | | write_equation_systems() 103 0.0006 0.000006 0.3022 0.002934 0.04 19.64 | | | | MeshTools::Generation | | build_cube() 1 0.0005 0.000519 0.0005 0.000519 0.03 0.03 | | | | Parallel | | allgather() 1 0.0000 0.000000 0.0000 0.000000 0.00 0.00 | | | | Partitioner | | single_partition() 1 0.0000 0.000038 0.0000 0.000038 0.00 0.00 | | | | PetscNonlinearSolver | | jacobian() 151 0.3614 0.002394 0.5127 0.003395 23.49 33.31 | | residual() 252 0.5292 0.002100 0.7831 0.003108 34.39 50.89 | | solve() 101 0.0635 0.000629 1.3615 0.013480 4.13 88.47 | | | | PointLocatorTree | | init(no master) 1 0.0010 0.000982 0.0010 0.000982 0.06 0.06 | | operator() 2 0.0000 0.000013 0.0000 0.000016 0.00 0.00 | | | | System | | project_fem_vector() 1 0.0001 0.000073 0.0039 0.003912 0.00 0.25 | | project_vector(FunctionBase) 1 0.0000 0.000005 0.0039 0.003917 0.00 0.25 | | solve() 101 0.0044 0.000044 1.3659 0.013524 0.29 88.75 | ----------------------------------------------------------------------------------------------------------------- | Totals: 1766007 1.5390 100.00 | ----------------------------------------------------------------------------------------------------------------- *************************************************************** * Done Running Example miscellaneous_ex7: * example-opt --verbose dim=1 N=1024 initial_state=strip initial_center=0.5 initial_width=0.1 dt=1e-10 max_time=1e-8 ***************************************************************