Link to the source code for this example:

Open adaptivity_ex1 in new tab.


The console output of the program:

***************************************************************
* Running Example adaptivity_ex1:
*   example-opt  
***************************************************************
 
Error estimate
l2 norm = 6.92141
maximum = 3.48539
Error estimate
l2 norm = 4.26669
maximum = 2.13334
Error estimate
l2 norm = 1.4544
maximum = 0.727055
Error estimate
l2 norm = 0.308552
maximum = 0.152269
Error estimate
l2 norm = 0.0599993
maximum = 0.0230905

 -------------------------------------------------------------------------------------------------------------------
| Time:           Wed Apr 13 09:20:30 2016                                                                          |
| OS:             Darwin                                                                                            |
| HostName:       peterson-laptop.local                                                                             |
| OS Release:     15.0.0                                                                                            |
| OS Version:     Darwin Kernel Version 15.0.0: Sat Sep 19 15:53:46 PDT 2015; root:xnu-3247.10.11~1/RELEASE_X86_64  |
| Machine:        x86_64                                                                                            |
| Username:       petejw                                                                                            |
| Configuration:  ../configure  'INSTALL=/usr/bin/install -C'                                                       |
|  '--with-methods=opt dbg'                                                                                         |
|  '--prefix=/Users/petejw/projects/libmesh_git/installed'                                                          |
|  '--enable-perflog'                                                                                               |
|  '--enable-tracefiles'                                                                                            |
|  '--disable-blocked-storage'                                                                                      |
|  '--enable-default-comm-world'                                                                                    |
|  '--enable-tecio'                                                                                                 |
|  '--enable-unique-ptr'                                                                                            |
|  '--enable-ifem'                                                                                                  |
|  'PETSC_DIR=/opt/moose/petsc/mpich_petsc-3.6.1/clang-opt-superlu'                                                 |
|  'SLEPC_DIR=/opt/petejw/slepc/3.6.1'                                                                              |
|  'CPPFLAGS= '                                                                                                     |
|  'LIBS= '                                                                                                         |
|  'CPPFLAGS=  '                                                                                                    |
|  'LIBS=  '                                                                                                        |
|  '--disable-netcdf-4'                                                                                             |
|  '--disable-testsets'                                                                                             |
|  'CXX=mpicxx'                                                                                                     |
|  'CC=mpicc'                                                                                                       |
|  'F77=mpif77'                                                                                                     |
|  'FC=mpif90'                                                                                                      |
|  'CPPFLAGS=   '                                                                                                   |
|  'LIBS=   '                                                                                                       |
 -------------------------------------------------------------------------------------------------------------------
 -----------------------------------------------------------------------------------------------------------------
| libMesh Performance: Alive time=0.013423, Active time=0.007095                                                  |
 -----------------------------------------------------------------------------------------------------------------
| Event                              nCalls     Total Time  Avg Time    Total Time  Avg Time    % of Active Time  |
|                                               w/o Sub     w/o Sub     With Sub    With Sub    w/o S    With S   |
|-----------------------------------------------------------------------------------------------------------------|
|                                                                                                                 |
|                                                                                                                 |
| DofMap                                                                                                          |
|   add_neighbors_to_send_list()     6          0.0001      0.000012    0.0001      0.000012    1.01     1.01     |
|   build_sparsity()                 6          0.0002      0.000033    0.0011      0.000187    2.78     15.84    |
|   create_dof_constraints()         6          0.0000      0.000001    0.0000      0.000001    0.07     0.07     |
|   distribute_dofs()                6          0.0001      0.000025    0.0004      0.000066    2.09     5.57     |
|   dof_indices()                    688        0.0010      0.000001    0.0010      0.000001    14.36    14.36    |
|   old_dof_indices()                300        0.0001      0.000000    0.0001      0.000000    0.96     0.96     |
|   prepare_send_list()              7          0.0000      0.000000    0.0000      0.000000    0.01     0.01     |
|   reinit()                         6          0.0002      0.000041    0.0002      0.000041    3.48     3.48     |
|                                                                                                                 |
| EquationSystems                                                                                                 |
|   build_solution_vector()          1          0.0001      0.000056    0.0001      0.000064    0.79     0.90     |
|                                                                                                                 |
| FE                                                                                                              |
|   compute_shape_functions()        408        0.0001      0.000000    0.0001      0.000000    1.66     1.66     |
|   init_shape_functions()           310        0.0003      0.000001    0.0003      0.000001    4.82     4.82     |
|   inverse_map()                    133        0.0000      0.000000    0.0000      0.000000    0.39     0.39     |
|                                                                                                                 |
| FEMap                                                                                                           |
|   compute_affine_map()             408        0.0001      0.000000    0.0001      0.000000    1.99     1.99     |
|   compute_face_map()               171        0.0000      0.000000    0.0000      0.000000    0.20     0.20     |
|   init_face_shape_functions()      5          0.0000      0.000000    0.0000      0.000000    0.03     0.03     |
|   init_reference_to_physical_map() 310        0.0001      0.000000    0.0001      0.000000    1.89     1.89     |
|                                                                                                                 |
| GenericProjector                                                                                                |
|   copy_dofs                        24         0.0000      0.000000    0.0001      0.000003    0.14     0.86     |
|   operator()                       5          0.0002      0.000042    0.0016      0.000327    2.97     23.07    |
|   project_edges                    76         0.0000      0.000000    0.0000      0.000000    0.11     0.11     |
|   project_interior                 76         0.0000      0.000000    0.0000      0.000000    0.10     0.10     |
|   project_nodes                    76         0.0001      0.000001    0.0013      0.000017    1.16     17.91    |
|   project_sides                    76         0.0000      0.000000    0.0000      0.000000    0.08     0.08     |
|                                                                                                                 |
| GnuPlotIO                                                                                                       |
|   write_nodal_data()               1          0.0003      0.000322    0.0003      0.000322    4.54     4.54     |
|                                                                                                                 |
| JumpErrorEstimator                                                                                              |
|   estimate_error()                 5          0.0007      0.000143    0.0011      0.000223    10.06    15.74    |
|                                                                                                                 |
| Mesh                                                                                                            |
|   contract()                       5          0.0000      0.000003    0.0000      0.000003    0.18     0.23     |
|   find_neighbors()                 6          0.0003      0.000054    0.0003      0.000054    4.59     4.59     |
|   renumber_nodes_and_elem()        17         0.0000      0.000001    0.0000      0.000001    0.13     0.13     |
|                                                                                                                 |
| MeshOutput                                                                                                      |
|   write_equation_systems()         1          0.0000      0.000013    0.0004      0.000399    0.18     5.62     |
|                                                                                                                 |
| MeshRefinement                                                                                                  |
|   _coarsen_elements()              10         0.0000      0.000001    0.0000      0.000001    0.21     0.21     |
|   _refine_elements()               10         0.0002      0.000015    0.0002      0.000022    2.14     3.14     |
|   add_node()                       228        0.0001      0.000000    0.0001      0.000000    0.78     0.78     |
|   make_coarsening_compatible()     11         0.0003      0.000027    0.0003      0.000027    4.19     4.19     |
|   make_flags_parallel_consistent() 15         0.0001      0.000008    0.0001      0.000008    1.68     1.68     |
|   make_refinement_compatible()     11         0.0000      0.000004    0.0000      0.000004    0.59     0.59     |
|                                                                                                                 |
| MeshTools::Generation                                                                                           |
|   build_cube()                     1          0.0000      0.000025    0.0000      0.000025    0.35     0.35     |
|                                                                                                                 |
| OldSolutionValue                                                                                                |
|   Number eval_at_node()            228        0.0000      0.000000    0.0000      0.000000    0.20     0.20     |
|   check_old_context(c)             24         0.0000      0.000001    0.0000      0.000001    0.24     0.47     |
|   check_old_context(c,p)           76         0.0001      0.000001    0.0001      0.000001    0.85     1.34     |
|   eval_at_point()                  76         0.0006      0.000008    0.0012      0.000015    8.32     16.22    |
|   eval_old_dofs()                  24         0.0000      0.000001    0.0001      0.000002    0.21     0.70     |
|                                                                                                                 |
| Parallel                                                                                                        |
|   allgather()                      6          0.0000      0.000000    0.0000      0.000000    0.00     0.00     |
|                                                                                                                 |
| Partitioner                                                                                                     |
|   single_partition()               6          0.0000      0.000003    0.0000      0.000003    0.25     0.25     |
|                                                                                                                 |
| PetscLinearSolver                                                                                               |
|   solve()                          6          0.0007      0.000117    0.0007      0.000117    9.92     9.92     |
|                                                                                                                 |
| StatisticsVector                                                                                                |
|   maximum()                        5          0.0000      0.000000    0.0000      0.000000    0.03     0.03     |
|                                                                                                                 |
| System                                                                                                          |
|   assemble()                       6          0.0002      0.000034    0.0004      0.000060    2.88     5.09     |
|   project_vector(old,new)          5          0.0003      0.000061    0.0020      0.000397    4.33     27.95    |
|                                                                                                                 |
| TopologyMap                                                                                                     |
|   init()                           10         0.0001      0.000015    0.0001      0.000015    2.06     2.06     |
 -----------------------------------------------------------------------------------------------------------------
| Totals:                            3897       0.0071                                          100.00            |
 -----------------------------------------------------------------------------------------------------------------

 
***************************************************************
* Done Running Example adaptivity_ex1:
*   example-opt  
***************************************************************