Link to the source code for this example:

Open miscellaneous_ex7 in new tab.


The console output of the program:

  CXX      example_dbg-biharmonic.o
  CXX      example_dbg-biharmonic_jr.o
  CXXLD    example-dbg
***************************************************************
* Running Example miscellaneous_ex7:
*   example-opt --verbose dim=1 N=1024 initial_state=strip initial_center=0.5 initial_width=0.1 dt=1e-10 max_time=1e-8 
***************************************************************
 
Biharmonic parameters:
verbose mode is on
mesh dimension           = 1
initial linear mesh size = 1024
kappa                    = 1
growth                   = 0
degenerate               = 0
Cahn-Hillard             = 0
netforce                 = 0
energy                   = 1
tol                      = 1e-08
theta                    = 0.001
theta_c                  = 1
log truncation           = 2
initial timestep size    = 1e-10
initial state:             strip
initial state center     = 0.5
initial state width      = 0.1
initial time (min_time)  = 0
integration time         = 1e-08
final time   (max_time)  = 1e-08
Crank-Nicholson weight   = 1
Output timestep          = 0
Output filename base:      bih.1
>>> Initializing Biharmonic
>>> Initializing Biharmonic::JR
<<< Initializing Biharmonic::JR
<<< Initializing Biharmonic
Writing state 1 at time 0 to file bih.1.e; output a total of 1 states so far
Solving for state 2, time 0
  NL step  0, |residual|_2 = 3.865471e+00
  NL step  1, |residual|_2 = 3.700105e-14
Writing state 2 at time 1.000000e-10 to file bih.1.e; output a total of 2 states so far
Solving for state 3, time 1.000000e-10
  NL step  0, |residual|_2 = 3.861870e+00
  NL step  1, |residual|_2 = 9.419949e-15
Writing state 3 at time 2.000000e-10 to file bih.1.e; output a total of 3 states so far
Solving for state 4, time 2.000000e-10
  NL step  0, |residual|_2 = 3.858634e+00
  NL step  1, |residual|_2 = 2.484184e-14
Writing state 4 at time 3.000000e-10 to file bih.1.e; output a total of 4 states so far
Solving for state 5, time 3.000000e-10
  NL step  0, |residual|_2 = 3.855483e+00
  NL step  1, |residual|_2 = 2.581990e-15
Writing state 5 at time 4.000000e-10 to file bih.1.e; output a total of 5 states so far
Solving for state 6, time 4.000000e-10
  NL step  0, |residual|_2 = 3.852464e+00
  NL step  1, |residual|_2 = 1.013857e-14
Writing state 6 at time 5.000000e-10 to file bih.1.e; output a total of 6 states so far
Solving for state 7, time 5.000000e-10
  NL step  0, |residual|_2 = 3.849501e+00
  NL step  1, |residual|_2 = 1.458791e-14
Writing state 7 at time 6.000000e-10 to file bih.1.e; output a total of 7 states so far
Solving for state 8, time 6.000000e-10
  NL step  0, |residual|_2 = 3.846621e+00
  NL step  1, |residual|_2 = 1.080643e-14
Writing state 8 at time 7.000000e-10 to file bih.1.e; output a total of 8 states so far
Solving for state 9, time 7.000000e-10
  NL step  0, |residual|_2 = 3.843784e+00
  NL step  1, |residual|_2 = 1.551695e-14
Writing state 9 at time 8.000000e-10 to file bih.1.e; output a total of 9 states so far
Solving for state 10, time 8.000000e-10
  NL step  0, |residual|_2 = 3.841009e+00
  NL step  1, |residual|_2 = 1.690656e-14
Writing state 10 at time 9.000000e-10 to file bih.1.e; output a total of 10 states so far
Solving for state 11, time 9.000000e-10
  NL step  0, |residual|_2 = 3.838268e+00
  NL step  1, |residual|_2 = 2.450236e-15
Writing state 11 at time 1.000000e-09 to file bih.1.e; output a total of 11 states so far
Solving for state 12, time 1.000000e-09
  NL step  0, |residual|_2 = 3.835577e+00
  NL step  1, |residual|_2 = 6.586079e-15
Writing state 12 at time 1.100000e-09 to file bih.1.e; output a total of 12 states so far
Solving for state 13, time 1.100000e-09
  NL step  0, |residual|_2 = 3.832915e+00
  NL step  1, |residual|_2 = 5.896559e-15
Writing state 13 at time 1.200000e-09 to file bih.1.e; output a total of 13 states so far
Solving for state 14, time 1.200000e-09
  NL step  0, |residual|_2 = 3.830295e+00
  NL step  1, |residual|_2 = 3.431924e-15
Writing state 14 at time 1.300000e-09 to file bih.1.e; output a total of 14 states so far
Solving for state 15, time 1.300000e-09
  NL step  0, |residual|_2 = 3.827700e+00
  NL step  1, |residual|_2 = 5.412929e-15
Writing state 15 at time 1.400000e-09 to file bih.1.e; output a total of 15 states so far
Solving for state 16, time 1.400000e-09
  NL step  0, |residual|_2 = 3.825140e+00
  NL step  1, |residual|_2 = 4.992858e-15
Writing state 16 at time 1.500000e-09 to file bih.1.e; output a total of 16 states so far
Solving for state 17, time 1.500000e-09
  NL step  0, |residual|_2 = 3.822604e+00
  NL step  1, |residual|_2 = 9.898635e-15
Writing state 17 at time 1.600000e-09 to file bih.1.e; output a total of 17 states so far
Solving for state 18, time 1.600000e-09
  NL step  0, |residual|_2 = 3.820098e+00
  NL step  1, |residual|_2 = 4.071119e-15
Writing state 18 at time 1.700000e-09 to file bih.1.e; output a total of 18 states so far
Solving for state 19, time 1.700000e-09
  NL step  0, |residual|_2 = 3.817613e+00
  NL step  1, |residual|_2 = 2.620636e-15
Writing state 19 at time 1.800000e-09 to file bih.1.e; output a total of 19 states so far
Solving for state 20, time 1.800000e-09
  NL step  0, |residual|_2 = 3.815156e+00
  NL step  1, |residual|_2 = 5.960056e-15
Writing state 20 at time 1.900000e-09 to file bih.1.e; output a total of 20 states so far
Solving for state 21, time 1.900000e-09
  NL step  0, |residual|_2 = 3.812718e+00
  NL step  1, |residual|_2 = 1.107967e-14
Writing state 21 at time 2.000000e-09 to file bih.1.e; output a total of 21 states so far
Solving for state 22, time 2.000000e-09
  NL step  0, |residual|_2 = 3.810305e+00
  NL step  1, |residual|_2 = 1.535662e-14
Writing state 22 at time 2.100000e-09 to file bih.1.e; output a total of 22 states so far
Solving for state 23, time 2.100000e-09
  NL step  0, |residual|_2 = 3.807909e+00
  NL step  1, |residual|_2 = 1.176115e-14
Writing state 23 at time 2.200000e-09 to file bih.1.e; output a total of 23 states so far
Solving for state 24, time 2.200000e-09
  NL step  0, |residual|_2 = 3.805536e+00
  NL step  1, |residual|_2 = 1.691962e-14
Writing state 24 at time 2.300000e-09 to file bih.1.e; output a total of 24 states so far
Solving for state 25, time 2.300000e-09
  NL step  0, |residual|_2 = 3.803179e+00
  NL step  1, |residual|_2 = 3.363071e-15
Writing state 25 at time 2.400000e-09 to file bih.1.e; output a total of 25 states so far
Solving for state 26, time 2.400000e-09
  NL step  0, |residual|_2 = 3.800842e+00
  NL step  1, |residual|_2 = 1.200336e-14
Writing state 26 at time 2.500000e-09 to file bih.1.e; output a total of 26 states so far
Solving for state 27, time 2.500000e-09
  NL step  0, |residual|_2 = 3.798522e+00
  NL step  1, |residual|_2 = 8.651098e-15
Writing state 27 at time 2.600000e-09 to file bih.1.e; output a total of 27 states so far
Solving for state 28, time 2.600000e-09
  NL step  0, |residual|_2 = 3.796220e+00
  NL step  1, |residual|_2 = 6.598501e-15
Writing state 28 at time 2.700000e-09 to file bih.1.e; output a total of 28 states so far
Solving for state 29, time 2.700000e-09
  NL step  0, |residual|_2 = 3.793932e+00
  NL step  1, |residual|_2 = 6.938762e-15
Writing state 29 at time 2.800000e-09 to file bih.1.e; output a total of 29 states so far
Solving for state 30, time 2.800000e-09
  NL step  0, |residual|_2 = 3.791663e+00
  NL step  1, |residual|_2 = 7.534192e-15
Writing state 30 at time 2.900000e-09 to file bih.1.e; output a total of 30 states so far
Solving for state 31, time 2.900000e-09
  NL step  0, |residual|_2 = 3.789407e+00
  NL step  1, |residual|_2 = 6.826261e-15
Writing state 31 at time 3.000000e-09 to file bih.1.e; output a total of 31 states so far
Solving for state 32, time 3.000000e-09
  NL step  0, |residual|_2 = 3.787167e+00
  NL step  1, |residual|_2 = 1.366032e-14
Writing state 32 at time 3.100000e-09 to file bih.1.e; output a total of 32 states so far
Solving for state 33, time 3.100000e-09
  NL step  0, |residual|_2 = 3.784941e+00
  NL step  1, |residual|_2 = 7.775207e-15
Writing state 33 at time 3.200000e-09 to file bih.1.e; output a total of 33 states so far
Solving for state 34, time 3.200000e-09
  NL step  0, |residual|_2 = 3.782730e+00
  NL step  1, |residual|_2 = 5.915989e-15
Writing state 34 at time 3.300000e-09 to file bih.1.e; output a total of 34 states so far
Solving for state 35, time 3.300000e-09
  NL step  0, |residual|_2 = 3.780531e+00
  NL step  1, |residual|_2 = 1.583271e-14
Writing state 35 at time 3.400000e-09 to file bih.1.e; output a total of 35 states so far
Solving for state 36, time 3.400000e-09
  NL step  0, |residual|_2 = 3.778347e+00
  NL step  1, |residual|_2 = 2.867504e-15
Writing state 36 at time 3.500000e-09 to file bih.1.e; output a total of 36 states so far
Solving for state 37, time 3.500000e-09
  NL step  0, |residual|_2 = 3.776174e+00
  NL step  1, |residual|_2 = 6.916565e-15
Writing state 37 at time 3.600000e-09 to file bih.1.e; output a total of 37 states so far
Solving for state 38, time 3.600000e-09
  NL step  0, |residual|_2 = 3.774015e+00
  NL step  1, |residual|_2 = 8.571053e-15
Writing state 38 at time 3.700000e-09 to file bih.1.e; output a total of 38 states so far
Solving for state 39, time 3.700000e-09
  NL step  0, |residual|_2 = 3.771868e+00
  NL step  1, |residual|_2 = 2.199033e-14
Writing state 39 at time 3.800000e-09 to file bih.1.e; output a total of 39 states so far
Solving for state 40, time 3.800000e-09
  NL step  0, |residual|_2 = 3.769733e+00
  NL step  1, |residual|_2 = 6.211343e-14
Writing state 40 at time 3.900000e-09 to file bih.1.e; output a total of 40 states so far
Solving for state 41, time 3.900000e-09
  NL step  0, |residual|_2 = 3.767609e+00
  NL step  1, |residual|_2 = 1.775819e-13
Writing state 41 at time 4.000000e-09 to file bih.1.e; output a total of 41 states so far
Solving for state 42, time 4.000000e-09
  NL step  0, |residual|_2 = 3.765498e+00
  NL step  1, |residual|_2 = 5.111619e-13
Writing state 42 at time 4.100000e-09 to file bih.1.e; output a total of 42 states so far
Solving for state 43, time 4.100000e-09
  NL step  0, |residual|_2 = 3.763397e+00
  NL step  1, |residual|_2 = 1.471075e-12
Writing state 43 at time 4.200000e-09 to file bih.1.e; output a total of 43 states so far
Solving for state 44, time 4.200000e-09
  NL step  0, |residual|_2 = 3.761307e+00
  NL step  1, |residual|_2 = 4.234083e-12
Writing state 44 at time 4.300000e-09 to file bih.1.e; output a total of 44 states so far
Solving for state 45, time 4.300000e-09
  NL step  0, |residual|_2 = 3.759228e+00
  NL step  1, |residual|_2 = 1.218675e-11
Writing state 45 at time 4.400000e-09 to file bih.1.e; output a total of 45 states so far
Solving for state 46, time 4.400000e-09
  NL step  0, |residual|_2 = 3.757160e+00
  NL step  1, |residual|_2 = 3.507717e-11
Writing state 46 at time 4.500000e-09 to file bih.1.e; output a total of 46 states so far
Solving for state 47, time 4.500000e-09
  NL step  0, |residual|_2 = 3.755101e+00
  NL step  1, |residual|_2 = 1.009625e-10
Writing state 47 at time 4.600000e-09 to file bih.1.e; output a total of 47 states so far
Solving for state 48, time 4.600000e-09
  NL step  0, |residual|_2 = 3.753053e+00
  NL step  1, |residual|_2 = 2.906006e-10
Writing state 48 at time 4.700000e-09 to file bih.1.e; output a total of 48 states so far
Solving for state 49, time 4.700000e-09
  NL step  0, |residual|_2 = 3.751014e+00
  NL step  1, |residual|_2 = 8.364360e-10
Writing state 49 at time 4.800000e-09 to file bih.1.e; output a total of 49 states so far
Solving for state 50, time 4.800000e-09
  NL step  0, |residual|_2 = 3.748985e+00
  NL step  1, |residual|_2 = 2.407514e-09
Writing state 50 at time 4.900000e-09 to file bih.1.e; output a total of 50 states so far
Solving for state 51, time 4.900000e-09
  NL step  0, |residual|_2 = 3.746966e+00
  NL step  1, |residual|_2 = 6.929549e-09
Writing state 51 at time 5.000000e-09 to file bih.1.e; output a total of 51 states so far
Solving for state 52, time 5.000000e-09
  NL step  0, |residual|_2 = 3.744956e+00
  NL step  1, |residual|_2 = 1.994532e-08
Writing state 52 at time 5.100000e-09 to file bih.1.e; output a total of 52 states so far
Solving for state 53, time 5.100000e-09
  NL step  0, |residual|_2 = 3.742955e+00
  NL step  1, |residual|_2 = 5.740863e-08
  NL step  2, |residual|_2 = 2.384681e-15
Writing state 53 at time 5.200000e-09 to file bih.1.e; output a total of 53 states so far
Solving for state 54, time 5.200000e-09
  NL step  0, |residual|_2 = 3.740963e+00
  NL step  1, |residual|_2 = 5.660993e-08
  NL step  2, |residual|_2 = 2.419184e-15
Writing state 54 at time 5.300000e-09 to file bih.1.e; output a total of 54 states so far
Solving for state 55, time 5.300000e-09
  NL step  0, |residual|_2 = 3.738979e+00
  NL step  1, |residual|_2 = 5.606989e-08
  NL step  2, |residual|_2 = 2.469188e-15
Writing state 55 at time 5.400000e-09 to file bih.1.e; output a total of 55 states so far
Solving for state 56, time 5.400000e-09
  NL step  0, |residual|_2 = 3.737005e+00
  NL step  1, |residual|_2 = 5.559189e-08
  NL step  2, |residual|_2 = 2.442416e-15
Writing state 56 at time 5.500000e-09 to file bih.1.e; output a total of 56 states so far
Solving for state 57, time 5.500000e-09
  NL step  0, |residual|_2 = 3.735039e+00
  NL step  1, |residual|_2 = 5.518270e-08
  NL step  2, |residual|_2 = 2.431436e-15
Writing state 57 at time 5.600000e-09 to file bih.1.e; output a total of 57 states so far
Solving for state 58, time 5.600000e-09
  NL step  0, |residual|_2 = 3.733082e+00
  NL step  1, |residual|_2 = 5.480558e-08
  NL step  2, |residual|_2 = 2.400013e-15
Writing state 58 at time 5.700000e-09 to file bih.1.e; output a total of 58 states so far
Solving for state 59, time 5.700000e-09
  NL step  0, |residual|_2 = 3.731132e+00
  NL step  1, |residual|_2 = 5.446405e-08
  NL step  2, |residual|_2 = 2.488918e-15
Writing state 59 at time 5.800000e-09 to file bih.1.e; output a total of 59 states so far
Solving for state 60, time 5.800000e-09
  NL step  0, |residual|_2 = 3.729191e+00
  NL step  1, |residual|_2 = 5.414304e-08
  NL step  2, |residual|_2 = 2.415734e-15
Writing state 60 at time 5.900000e-09 to file bih.1.e; output a total of 60 states so far
Solving for state 61, time 5.900000e-09
  NL step  0, |residual|_2 = 3.727257e+00
  NL step  1, |residual|_2 = 5.384478e-08
  NL step  2, |residual|_2 = 2.465045e-15
Writing state 61 at time 6.000000e-09 to file bih.1.e; output a total of 61 states so far
Solving for state 62, time 6.000000e-09
  NL step  0, |residual|_2 = 3.725332e+00
  NL step  1, |residual|_2 = 5.356114e-08
  NL step  2, |residual|_2 = 2.404997e-15
Writing state 62 at time 6.100000e-09 to file bih.1.e; output a total of 62 states so far
Solving for state 63, time 6.100000e-09
  NL step  0, |residual|_2 = 3.723414e+00
  NL step  1, |residual|_2 = 5.329367e-08
  NL step  2, |residual|_2 = 2.347143e-15
Writing state 63 at time 6.200000e-09 to file bih.1.e; output a total of 63 states so far
Solving for state 64, time 6.200000e-09
  NL step  0, |residual|_2 = 3.721504e+00
  NL step  1, |residual|_2 = 5.303732e-08
  NL step  2, |residual|_2 = 2.466288e-15
Writing state 64 at time 6.300000e-09 to file bih.1.e; output a total of 64 states so far
Solving for state 65, time 6.300000e-09
  NL step  0, |residual|_2 = 3.719601e+00
  NL step  1, |residual|_2 = 5.279325e-08
  NL step  2, |residual|_2 = 2.396288e-15
Writing state 65 at time 6.400000e-09 to file bih.1.e; output a total of 65 states so far
Solving for state 66, time 6.400000e-09
  NL step  0, |residual|_2 = 3.717706e+00
  NL step  1, |residual|_2 = 5.255803e-08
  NL step  2, |residual|_2 = 2.367857e-15
Writing state 66 at time 6.500000e-09 to file bih.1.e; output a total of 66 states so far
Solving for state 67, time 6.500000e-09
  NL step  0, |residual|_2 = 3.715818e+00
  NL step  1, |residual|_2 = 5.233254e-08
  NL step  2, |residual|_2 = 2.396083e-15
Writing state 67 at time 6.600000e-09 to file bih.1.e; output a total of 67 states so far
Solving for state 68, time 6.600000e-09
  NL step  0, |residual|_2 = 3.713937e+00
  NL step  1, |residual|_2 = 5.211431e-08
  NL step  2, |residual|_2 = 2.331777e-15
Writing state 68 at time 6.700000e-09 to file bih.1.e; output a total of 68 states so far
Solving for state 69, time 6.700000e-09
  NL step  0, |residual|_2 = 3.712063e+00
  NL step  1, |residual|_2 = 5.190405e-08
  NL step  2, |residual|_2 = 2.171709e-15
Writing state 69 at time 6.800000e-09 to file bih.1.e; output a total of 69 states so far
Solving for state 70, time 6.800000e-09
  NL step  0, |residual|_2 = 3.710197e+00
  NL step  1, |residual|_2 = 5.169989e-08
  NL step  2, |residual|_2 = 2.386625e-15
Writing state 70 at time 6.900000e-09 to file bih.1.e; output a total of 70 states so far
Solving for state 71, time 6.900000e-09
  NL step  0, |residual|_2 = 3.708336e+00
  NL step  1, |residual|_2 = 5.150241e-08
  NL step  2, |residual|_2 = 2.390530e-15
Writing state 71 at time 7.000000e-09 to file bih.1.e; output a total of 71 states so far
Solving for state 72, time 7.000000e-09
  NL step  0, |residual|_2 = 3.706484e+00
  NL step  1, |residual|_2 = 5.131016e-08
  NL step  2, |residual|_2 = 2.452716e-15
Writing state 72 at time 7.100000e-09 to file bih.1.e; output a total of 72 states so far
Solving for state 73, time 7.100000e-09
  NL step  0, |residual|_2 = 3.704637e+00
  NL step  1, |residual|_2 = 5.112361e-08
  NL step  2, |residual|_2 = 2.443674e-15
Writing state 73 at time 7.200000e-09 to file bih.1.e; output a total of 73 states so far
Solving for state 74, time 7.200000e-09
  NL step  0, |residual|_2 = 3.702797e+00
  NL step  1, |residual|_2 = 5.094161e-08
  NL step  2, |residual|_2 = 2.504119e-15
Writing state 74 at time 7.300000e-09 to file bih.1.e; output a total of 74 states so far
Solving for state 75, time 7.300000e-09
  NL step  0, |residual|_2 = 3.700963e+00
  NL step  1, |residual|_2 = 5.076456e-08
  NL step  2, |residual|_2 = 2.483832e-15
Writing state 75 at time 7.400000e-09 to file bih.1.e; output a total of 75 states so far
Solving for state 76, time 7.400000e-09
  NL step  0, |residual|_2 = 3.699137e+00
  NL step  1, |residual|_2 = 5.059150e-08
  NL step  2, |residual|_2 = 2.485467e-15
Writing state 76 at time 7.500000e-09 to file bih.1.e; output a total of 76 states so far
Solving for state 77, time 7.500000e-09
  NL step  0, |residual|_2 = 3.697316e+00
  NL step  1, |residual|_2 = 5.042279e-08
  NL step  2, |residual|_2 = 2.485405e-15
Writing state 77 at time 7.600000e-09 to file bih.1.e; output a total of 77 states so far
Solving for state 78, time 7.600000e-09
  NL step  0, |residual|_2 = 3.695502e+00
  NL step  1, |residual|_2 = 5.025763e-08
  NL step  2, |residual|_2 = 2.462417e-15
Writing state 78 at time 7.700000e-09 to file bih.1.e; output a total of 78 states so far
Solving for state 79, time 7.700000e-09
  NL step  0, |residual|_2 = 3.693694e+00
  NL step  1, |residual|_2 = 5.009634e-08
  NL step  2, |residual|_2 = 2.330280e-15
Writing state 79 at time 7.800000e-09 to file bih.1.e; output a total of 79 states so far
Solving for state 80, time 7.800000e-09
  NL step  0, |residual|_2 = 3.691892e+00
  NL step  1, |residual|_2 = 4.993823e-08
  NL step  2, |residual|_2 = 2.557443e-15
Writing state 80 at time 7.900000e-09 to file bih.1.e; output a total of 80 states so far
Solving for state 81, time 7.900000e-09
  NL step  0, |residual|_2 = 3.690096e+00
  NL step  1, |residual|_2 = 4.978357e-08
  NL step  2, |residual|_2 = 2.510954e-15
Writing state 81 at time 8.000000e-09 to file bih.1.e; output a total of 81 states so far
Solving for state 82, time 8.000000e-09
  NL step  0, |residual|_2 = 3.688306e+00
  NL step  1, |residual|_2 = 4.963179e-08
  NL step  2, |residual|_2 = 2.532870e-15
Writing state 82 at time 8.100000e-09 to file bih.1.e; output a total of 82 states so far
Solving for state 83, time 8.100000e-09
  NL step  0, |residual|_2 = 3.686522e+00
  NL step  1, |residual|_2 = 4.948314e-08
  NL step  2, |residual|_2 = 2.409232e-15
Writing state 83 at time 8.200000e-09 to file bih.1.e; output a total of 83 states so far
Solving for state 84, time 8.200000e-09
  NL step  0, |residual|_2 = 3.684744e+00
  NL step  1, |residual|_2 = 4.933709e-08
  NL step  2, |residual|_2 = 2.373077e-15
Writing state 84 at time 8.300000e-09 to file bih.1.e; output a total of 84 states so far
Solving for state 85, time 8.300000e-09
  NL step  0, |residual|_2 = 3.682971e+00
  NL step  1, |residual|_2 = 4.919388e-08
  NL step  2, |residual|_2 = 2.567430e-15
Writing state 85 at time 8.400000e-09 to file bih.1.e; output a total of 85 states so far
Solving for state 86, time 8.400000e-09
  NL step  0, |residual|_2 = 3.681205e+00
  NL step  1, |residual|_2 = 4.905306e-08
  NL step  2, |residual|_2 = 2.455994e-15
Writing state 86 at time 8.500000e-09 to file bih.1.e; output a total of 86 states so far
Solving for state 87, time 8.500000e-09
  NL step  0, |residual|_2 = 3.679443e+00
  NL step  1, |residual|_2 = 4.891484e-08
  NL step  2, |residual|_2 = 2.374471e-15
Writing state 87 at time 8.600000e-09 to file bih.1.e; output a total of 87 states so far
Solving for state 88, time 8.600000e-09
  NL step  0, |residual|_2 = 3.677688e+00
  NL step  1, |residual|_2 = 4.877880e-08
  NL step  2, |residual|_2 = 2.483941e-15
Writing state 88 at time 8.700000e-09 to file bih.1.e; output a total of 88 states so far
Solving for state 89, time 8.700000e-09
  NL step  0, |residual|_2 = 3.675938e+00
  NL step  1, |residual|_2 = 4.864515e-08
  NL step  2, |residual|_2 = 2.398725e-15
Writing state 89 at time 8.800000e-09 to file bih.1.e; output a total of 89 states so far
Solving for state 90, time 8.800000e-09
  NL step  0, |residual|_2 = 3.674193e+00
  NL step  1, |residual|_2 = 4.851352e-08
  NL step  2, |residual|_2 = 2.530767e-15
Writing state 90 at time 8.900000e-09 to file bih.1.e; output a total of 90 states so far
Solving for state 91, time 8.900000e-09
  NL step  0, |residual|_2 = 3.672454e+00
  NL step  1, |residual|_2 = 4.838409e-08
  NL step  2, |residual|_2 = 2.615689e-15
Writing state 91 at time 9.000000e-09 to file bih.1.e; output a total of 91 states so far
Solving for state 92, time 9.000000e-09
  NL step  0, |residual|_2 = 3.670720e+00
  NL step  1, |residual|_2 = 4.825654e-08
  NL step  2, |residual|_2 = 2.568743e-15
Writing state 92 at time 9.100000e-09 to file bih.1.e; output a total of 92 states so far
Solving for state 93, time 9.100000e-09
  NL step  0, |residual|_2 = 3.668992e+00
  NL step  1, |residual|_2 = 4.813102e-08
  NL step  2, |residual|_2 = 2.470177e-15
Writing state 93 at time 9.200000e-09 to file bih.1.e; output a total of 93 states so far
Solving for state 94, time 9.200000e-09
  NL step  0, |residual|_2 = 3.667269e+00
  NL step  1, |residual|_2 = 4.800725e-08
  NL step  2, |residual|_2 = 2.370272e-15
Writing state 94 at time 9.300000e-09 to file bih.1.e; output a total of 94 states so far
Solving for state 95, time 9.300000e-09
  NL step  0, |residual|_2 = 3.665550e+00
  NL step  1, |residual|_2 = 4.788536e-08
  NL step  2, |residual|_2 = 2.495545e-15
Writing state 95 at time 9.400000e-09 to file bih.1.e; output a total of 95 states so far
Solving for state 96, time 9.400000e-09
  NL step  0, |residual|_2 = 3.663837e+00
  NL step  1, |residual|_2 = 4.776511e-08
  NL step  2, |residual|_2 = 2.493295e-15
Writing state 96 at time 9.500000e-09 to file bih.1.e; output a total of 96 states so far
Solving for state 97, time 9.500000e-09
  NL step  0, |residual|_2 = 3.662129e+00
  NL step  1, |residual|_2 = 4.764662e-08
  NL step  2, |residual|_2 = 2.383296e-15
Writing state 97 at time 9.600000e-09 to file bih.1.e; output a total of 97 states so far
Solving for state 98, time 9.600000e-09
  NL step  0, |residual|_2 = 3.660426e+00
  NL step  1, |residual|_2 = 4.752966e-08
  NL step  2, |residual|_2 = 2.499442e-15
Writing state 98 at time 9.700000e-09 to file bih.1.e; output a total of 98 states so far
Solving for state 99, time 9.700000e-09
  NL step  0, |residual|_2 = 3.658728e+00
  NL step  1, |residual|_2 = 4.741435e-08
  NL step  2, |residual|_2 = 2.524939e-15
Writing state 99 at time 9.800000e-09 to file bih.1.e; output a total of 99 states so far
Solving for state 100, time 9.800000e-09
  NL step  0, |residual|_2 = 3.657035e+00
  NL step  1, |residual|_2 = 4.730047e-08
  NL step  2, |residual|_2 = 2.548990e-15
Writing state 100 at time 9.900000e-09 to file bih.1.e; output a total of 100 states so far
Solving for state 101, time 9.900000e-09
  NL step  0, |residual|_2 = 3.655347e+00
  NL step  1, |residual|_2 = 4.718814e-08
  NL step  2, |residual|_2 = 2.498620e-15
Writing state 101 at time 1.000000e-08 to file bih.1.e; output a total of 101 states so far
Solving for state 102, time 1.000000e-08
  NL step  0, |residual|_2 = 3.653664e+00
  NL step  1, |residual|_2 = 4.707716e-08
  NL step  2, |residual|_2 = 2.539593e-15
Writing state 102 at time 1.010000e-08 to file bih.1.e; output a total of 102 states so far
Writing state 102 at time 1.010000e-08 to file bih.1.e; output a total of 103 states so far

 -------------------------------------------------------------------------------------------------------------------
| Time:           Wed Apr 13 09:36:03 2016                                                                          |
| OS:             Darwin                                                                                            |
| HostName:       peterson-laptop.local                                                                             |
| OS Release:     15.0.0                                                                                            |
| OS Version:     Darwin Kernel Version 15.0.0: Sat Sep 19 15:53:46 PDT 2015; root:xnu-3247.10.11~1/RELEASE_X86_64  |
| Machine:        x86_64                                                                                            |
| Username:       petejw                                                                                            |
| Configuration:  ../configure  'INSTALL=/usr/bin/install -C'                                                       |
|  '--with-methods=opt dbg'                                                                                         |
|  '--prefix=/Users/petejw/projects/libmesh_git/installed'                                                          |
|  '--enable-perflog'                                                                                               |
|  '--enable-tracefiles'                                                                                            |
|  '--disable-blocked-storage'                                                                                      |
|  '--enable-default-comm-world'                                                                                    |
|  '--enable-tecio'                                                                                                 |
|  '--enable-unique-ptr'                                                                                            |
|  '--enable-ifem'                                                                                                  |
|  'PETSC_DIR=/opt/moose/petsc/mpich_petsc-3.6.1/clang-opt-superlu'                                                 |
|  'SLEPC_DIR=/opt/petejw/slepc/3.6.1'                                                                              |
|  'CPPFLAGS= '                                                                                                     |
|  'LIBS= '                                                                                                         |
|  'CPPFLAGS=  '                                                                                                    |
|  'LIBS=  '                                                                                                        |
|  '--disable-netcdf-4'                                                                                             |
|  '--disable-testsets'                                                                                             |
|  'CXX=mpicxx'                                                                                                     |
|  'CC=mpicc'                                                                                                       |
|  'F77=mpif77'                                                                                                     |
|  'FC=mpif90'                                                                                                      |
|  'CPPFLAGS=   '                                                                                                   |
|  'LIBS=   '                                                                                                       |
 -------------------------------------------------------------------------------------------------------------------
 -----------------------------------------------------------------------------------------------------------------
| libMesh Performance: Alive time=2.01132, Active time=1.53902                                                    |
 -----------------------------------------------------------------------------------------------------------------
| Event                              nCalls     Total Time  Avg Time    Total Time  Avg Time    % of Active Time  |
|                                               w/o Sub     w/o Sub     With Sub    With Sub    w/o S    With S   |
|-----------------------------------------------------------------------------------------------------------------|
|                                                                                                                 |
|                                                                                                                 |
| DofMap                                                                                                          |
|   add_neighbors_to_send_list()     1          0.0002      0.000156    0.0002      0.000156    0.01     0.01     |
|   build_constraint_matrix()        412672     0.0607      0.000000    0.0607      0.000000    3.95     3.95     |
|   build_sparsity()                 1          0.0013      0.001290    0.0016      0.001575    0.08     0.10     |
|   constrain_elem_matrix()          154624     0.0211      0.000000    0.0211      0.000000    1.37     1.37     |
|   constrain_elem_vector()          258048     0.0359      0.000000    0.0359      0.000000    2.33     2.33     |
|   create_dof_constraints()         1          0.0012      0.001222    0.0023      0.002310    0.08     0.15     |
|   distribute_dofs()                1          0.0002      0.000208    0.0011      0.001125    0.01     0.07     |
|   dof_indices()                    521220     0.0676      0.000000    0.0676      0.000000    4.40     4.40     |
|   enforce_constraints_exactly()    505        0.0034      0.000007    0.0034      0.000007    0.22     0.22     |
|   prepare_send_list()              2          0.0000      0.000000    0.0000      0.000000    0.00     0.00     |
|   reinit()                         1          0.0009      0.000916    0.0009      0.000916    0.06     0.06     |
|                                                                                                                 |
| EquationSystems                                                                                                 |
|   build_solution_vector()          103        0.2759      0.002679    0.2976      0.002889    17.93    19.33    |
|                                                                                                                 |
| ExodusII_IO                                                                                                     |
|   write_nodal_data()               103        0.0040      0.000039    0.0040      0.000039    0.26     0.26     |
|                                                                                                                 |
| FE                                                                                                              |
|   compute_shape_functions()        407        0.0021      0.000005    0.0021      0.000005    0.13     0.13     |
|   init_shape_functions()           407        0.0055      0.000014    0.0055      0.000014    0.36     0.36     |
|   inverse_map()                    8          0.0000      0.000001    0.0000      0.000001    0.00     0.00     |
|                                                                                                                 |
| FEMap                                                                                                           |
|   compute_affine_map()             412676     0.0931      0.000000    0.0931      0.000000    6.05     6.05     |
|   compute_face_map()               2          0.0000      0.000002    0.0000      0.000002    0.00     0.00     |
|   init_face_shape_functions()      2          0.0000      0.000001    0.0000      0.000001    0.00     0.00     |
|   init_reference_to_physical_map() 407        0.0004      0.000001    0.0004      0.000001    0.03     0.03     |
|                                                                                                                 |
| GenericProjector                                                                                                |
|   operator()                       1          0.0020      0.001981    0.0038      0.003793    0.13     0.25     |
|   project_edges                    1024       0.0001      0.000000    0.0001      0.000000    0.00     0.00     |
|   project_interior                 1024       0.0001      0.000000    0.0001      0.000000    0.00     0.00     |
|   project_nodes                    1024       0.0007      0.000001    0.0007      0.000001    0.05     0.05     |
|   project_sides                    1024       0.0001      0.000000    0.0001      0.000000    0.00     0.00     |
|                                                                                                                 |
| Mesh                                                                                                            |
|   find_neighbors()                 1          0.0016      0.001626    0.0016      0.001626    0.11     0.11     |
|   renumber_nodes_and_elem()        2          0.0000      0.000015    0.0000      0.000015    0.00     0.00     |
|                                                                                                                 |
| MeshOutput                                                                                                      |
|   write_equation_systems()         103        0.0006      0.000006    0.3022      0.002934    0.04     19.64    |
|                                                                                                                 |
| MeshTools::Generation                                                                                           |
|   build_cube()                     1          0.0005      0.000519    0.0005      0.000519    0.03     0.03     |
|                                                                                                                 |
| Parallel                                                                                                        |
|   allgather()                      1          0.0000      0.000000    0.0000      0.000000    0.00     0.00     |
|                                                                                                                 |
| Partitioner                                                                                                     |
|   single_partition()               1          0.0000      0.000038    0.0000      0.000038    0.00     0.00     |
|                                                                                                                 |
| PetscNonlinearSolver                                                                                            |
|   jacobian()                       151        0.3614      0.002394    0.5127      0.003395    23.49    33.31    |
|   residual()                       252        0.5292      0.002100    0.7831      0.003108    34.39    50.89    |
|   solve()                          101        0.0635      0.000629    1.3615      0.013480    4.13     88.47    |
|                                                                                                                 |
| PointLocatorTree                                                                                                |
|   init(no master)                  1          0.0010      0.000982    0.0010      0.000982    0.06     0.06     |
|   operator()                       2          0.0000      0.000013    0.0000      0.000016    0.00     0.00     |
|                                                                                                                 |
| System                                                                                                          |
|   project_fem_vector()             1          0.0001      0.000073    0.0039      0.003912    0.00     0.25     |
|   project_vector(FunctionBase)     1          0.0000      0.000005    0.0039      0.003917    0.00     0.25     |
|   solve()                          101        0.0044      0.000044    1.3659      0.013524    0.29     88.75    |
 -----------------------------------------------------------------------------------------------------------------
| Totals:                            1766007    1.5390                                          100.00            |
 -----------------------------------------------------------------------------------------------------------------

 
***************************************************************
* Done Running Example miscellaneous_ex7:
*   example-opt --verbose dim=1 N=1024 initial_state=strip initial_center=0.5 initial_width=0.1 dt=1e-10 max_time=1e-8 
***************************************************************